Scomber scombrus (Atlantic mackerel): 133994086
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Entry
133994086 CDS
T10651
Symbol
gemin5
Name
(RefSeq) gem-associated protein 5
KO
K13133
gem associated protein 5
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssco03019
]
133994086 (gemin5)
03041 Spliceosome [BR:
ssco03041
]
133994086 (gemin5)
Messenger RNA biogenesis [BR:
ssco03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
133994086 (gemin5)
mRNA cycle factors
P-body specific factors
133994086 (gemin5)
Spliceosome [BR:
ssco03041
]
Other splicing related proteins
Proteins involved in snRNP biogenesis
SMN complex factors
133994086 (gemin5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_GEMI5
WD40_CDC20-Fz
Beta-prop_THOC3
Beta-prop_WDR3_1st
GEMI5_RBS
Beta-prop_RIG_2nd
Beta-prop_WDR5
Beta-prop_EML_2
WD40_Prp19
WD40
WD40_WDHD1_1st
Beta-prop_WDR36-Utp21_1st
ANAPC4_WD40
EIF3I
Beta-prop_WDR3_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_Aladin
Beta-prop_TEP1_2nd
Beta-prop_RIG_1st
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_WDR75_1st
Beta-prop_WDR19_1st
Beta-prop_IFT140_1st
WD40_MABP1-WDR62_2nd
Beta-prop_HPS5
WD40_Gbeta
Beta-prop_TEP1_C
Beta-prop_EIPR1
WDR90_beta-prop_4th
WD40_RFWD3
NBCH_WD40
Beta-prop_WDR41
Beta-prop_SPT8
Beta-prop_ACSF4
Beta-prop_WDR75_2nd
WD_LRWD1
RAB3GAP2_N
WD40_MABP1-WDR62_1st
TPR_IF140-IFT172
TPR_Sec16
DUF6624
Motif
Other DBs
NCBI-GeneID:
133994086
NCBI-ProteinID:
XP_062289258
LinkDB
All DBs
Position
14:complement(26788985..26820806)
Genome browser
AA seq
1481 aa
AA seq
DB search
MHERSLPASPNWYCSRCSDVSSTGVLGVGAKNIIYLVEVCASSCRVSGELVGHKGLVSGF
SFCQHAGQNHLCVSSSNDGNVRFWDSDSKTLIREHTAHQSPVSAVHWSPLDKNLVVSGDE
KGVVVCHWYNTGDTSSFFPEPRTIFCLTCSPHTWSCVAVGYKDGMIVLIDVSKKGEVLHR
LRGHDDEIHSLAWSPLANEVALFSRPEDSEVTNGIATGEERGCYLASGSKDQTVRVWSTA
KGKAVMTMKLPYLKKRGSAVDPGVKERLWLHVHWPKGRPTQLVSSCFSGELVLWDLTKTG
KHRWSLFGSSSEGQNHNRIVFNMSSVQLQDGRELLISTSMDREVKCWDLSSLDCCWTLPT
LGGFVYALTFSPVGAGCLALGVGDNMIRVWNTLTTQNQYDTRTFWQGIKSKVTALAWHPK
REGSLAFGTDDGKVGIYEVFSNKPPQISSSYHRKTVYTLAWGPPVPPMSFGAAGGKSSHS
LYSCAGEGVILQHDPSNLSGEASDIDTLIKDTNNIKHKLSPHTDLRWKPDGKVVAIGNED
GCIDVYEAPSLRLLCSIQQHHKIINTLRWHHDHSAASELHFLLASGSSNAIVYVHDLRSV
IENPPESPAVLTEPYRRLCGHTNKITSMAWSPHHDARLVTVSYDGTAQVWDVLQEEAVSN
YRGHVGYLLSVDWSPVDPDVIWTGGKDFTLQEWRVSKQEFTKPPKGKKTVDLLEKVKANP
KLKRKNKKSSGASGAAGATPPPPEMNGESVRGGEKTGQEPSDEDEKDEVSSTNSSIPPSA
ALEPYRRPAAAVKSKDKADLLKRKKPRSMLPVSTSMDHRPKDELLQDCITLASVKHSEAP
PAGCVPGQGEHIHLGLFTDRQALHRMFEAEEESHVEAGHFETVVYLRLWSGDLEGALQLA
TEKGELNDHLISIAPMAGFEVWSRTVEAYVKQLCLQEQYLKASSHLLSINRLYEAVDLLR
SHKLYREAIALVKARLPEDEPVLKELYTVWASALERDGHFSAAAKCYVAAGASFDAAKVI
ARKNDVSSLRTAAILARISGETALAQSLALRCAKDLAAAQDWVPAQEVLSSQDSLLVHRL
HLCVAELLSAVLAPVVPQSCVSSHAWTRTMTTTTSPPGERRVRLQDRVRGVWKQQFGVSQ
DSAGHRSVRALLQELKSAESPTPTASVPLRQVLMYSSLHLTRSVLSWLSDDDDDDEQVMK
ELWRSVSWFRDSGNFSVSAEICRMLFPEGDVGVCSRKQHIEGEEEEKEGGEKEKGEEEAA
ADSLQAFVLQHRLYERWWSLSADTQRVPNGDEAKKEDEAVNGASSSSSSSGRSVDDKLDF
DASPLLSERHAACQAAQRSVREIQERLSSMVLQHSSRAQGEQLDADVSSSSSSSVTAAES
RETSEAGERPAETLLSLSVKMSEYQKHLADFPQMIKMFPHPDVVECCLVVLHLSKSSSSV
SESMRHEAKSLLQKYGTSPSVLKASQSFLTEPEPEPVTVTQ
NT seq
4446 nt
NT seq
+upstream
nt +downstream
nt
atgcacgagcggtcgctacccgcctcccctaattggtactgctcgcgctgcagtgacgtc
agcagcacaggggtgctgggtgtcggagccaaaaacatcatctacttggtggaggtgtgt
gcgtcctcatgcagagtgtcaggtgagctcgtcggccataaaggtttagtgtcgggcttt
tcgttctgtcagcacgccggccagaaccacctctgtgtcagctcctccaacgatggcaac
gttcgcttctgggactcggacagcaagactctcattagagagcacacagctcatcagagc
ccggtctcggccgtgcactggtccccgctggataagaacctggtggtgtctggagatgag
aagggcgtggtggtttgtcactggtacaacacgggagacaccagcagcttcttcccagag
cccaggaccatcttctgcctcacctgctcccctcacacctggagctgcgtggctgtgggg
tacaaagatgggatgatcgtgctgattgacgtgagtaagaaaggcgaggtgttgcaccgt
ctccgtggacacgatgatgaaatacactcgctggcttggtcgccgctggccaatgaggtc
gctctcttcagcagacctgaggacagtgaagtaaccaatggcatagcaacaggagaggag
aggggctgctatctggcttctgggagcaaagaccagacggtgagggtctggagcacagcg
aagggcaaagctgtgatgaccatgaagctgccgtatctgaagaagagaggctctgccgtc
gaccccggggtcaaagagagactctggctccacgtccactggcctaagggacggccgacg
cagctcgtgtccagctgcttcagtggtgagttagtactttgggacttgactaagacgggg
aagcaccgctggtctctgttcggctcgtcttcggagggtcagaaccacaacaggatcgtc
ttcaacatgagttcagttcagctgcaggacggcagagagctgctcatcagcacctctatg
gaccgagaggtgaaatgttgggacttgtcgtctctggactgctgctggactcttcccact
ctgggcggtttcgtctacgctctgaccttctcccccgtgggcgccgggtgtttggcgctg
ggcgtcggtgacaacatgatccgggtgtggaacacgttgaccacacagaaccagtacgac
accagaaccttctggcaaggcatcaaatccaaagtcactgcgctagcgtggcatcctaaa
agagaaggatcgctggcttttggaacagatgatgggaaagtcggcatctatgaagtcttc
tcaaataaacctccgcagatatcgagctcctatcacagaaaaaccgtgtacacgctggct
tggggacctccagtcccaccgatgtcatttggtgcagcgggaggaaagtcgtcccacagc
ttgtatagctgcgctggtgaaggcgtcatcctgcagcacgatccatctaacctgagcgga
gaggcgtcagatatcgacacactgatcaaagacaccaacaacatcaagcacaaactgtct
ccacataccgacctcagatggaagccagatgggaaagtggtcgccatcggcaacgaggac
gggtgcattgatgtatacgaggctcccagtctgaggctgctgtgcagcatccagcagcat
cacaagatcatcaacacgctccgctggcatcacgaccacagcgctgcctcagagctgcac
ttcctcctggcttcaggctccagcaacgccatcgtctacgtacacgacctccgctcagtc
atagagaatcctccggagagccctgcggtgttgacggagccgtaccgccggctgtgtggt
cacacaaataaaatcaccagcatggcttggagtccgcaccacgacgcccggctggtcacc
gtctcgtacgacggcacagcgcaggtgtgggacgttctgcaggaggaagctgtctctaac
tatcggggtcacgtcggttaccttttatctgtcgactggtcgcccgtcgaccccgatgtg
atctggaccggaggaaaagacttcaccctgcaggagtggagagtctccaagcaggagttc
actaaaccgcctaaagggaaaaagacggtggacttgttggagaaggtgaaggccaacccc
aaactgaagaggaagaacaagaagtcatcgggggcatcgggggccgccggagcgacgcct
cctccgccagagatgaacggagagtctgttagaggaggagagaagacaggacaggagccg
tctgatgaagacgagaaagatgaagtcagctccactaacagctccatacctccatcagct
gctctcgagccgtacagacgaccggccgctgcagtaaagagcaaagacaaagcagacttg
ctgaagaggaagaagcctcgctccatgctgcctgtcagtacttccatggatcatcgcccc
aaagatgagctgctgcaggactgcatcactctggcctccgtcaaacacagcgaagcgccc
cctgcaggttgtgtcccaggtcagggagagcacatccatctgggtctcttcactgaccga
caggctctgcatcgcatgtttgaagcagaagaggagagtcacgtggaggcgggtcacttt
gagaccgtggtgtacctgcggctgtggagcggtgacctggagggggcgctgcagctcgct
acggagaaaggagagctgaatgatcacctgatctccatcgctcccatggctgggtttgag
gtgtggagtcggacggtggaggcgtacgtgaagcagctgtgtctgcaggagcagtacctg
aaggcatcgtctcacctgctgtcaatcaacaggctgtacgaggccgtcgacctgctgcgc
tcacacaagctctacagggaggccatcgctctggtcaaagctcggctgccggaggacgag
ccggtcctgaaggagctttacaccgtctgggcctcggcgctggagagagacggacatttc
tctgctgctgctaaatgctacgtggctgccggcgctagcttcgacgcagccaaagtcatc
gcccggaagaacgacgtttcctcgctgaggacggcggccatcttggcgaggatctccggg
gaaacggctctggctcagtcgctggcgctgcgctgtgctaaagatctggctgctgctcag
gactgggtcccagctcaggaggtgctgagctcccaggacagtctgctggtccacaggctt
cacctctgtgtggcggagctgctttctgctgttctggctccagtcgttcctcagtcctgc
gtctccagtcacgcctggacgaggacgatgacgacgacgacatcaccgccgggcgagcga
cgcgtccgcctgcaggaccgagtgagaggagtgtggaagcagcagtttggtgtttctcag
gactcggcaggtcatcgtagcgtcagagctttgctgcaggagctgaagtctgcagagagt
ccgacgcccaccgccagcgttcctctcagacaggtgctgatgtattcatccctccatctg
acccgctctgtgttgagttggttatcagatgatgatgatgatgatgagcaggtgatgaag
gagttgtggcgttcggtgtcttggttcagagactcaggaaacttcagtgtgtcagcagag
atctgcaggatgcttttccctgaaggtgacgtcggcgtttgttccaggaaacaacacata
gaaggagaagaagaagaaaaagaaggaggagaaaaagaaaaaggagaagaagaagctgca
gctgacagtctgcaggcgttcgtcctccagcatcgcctctatgagcgctggtggagcctc
tcagccgacacacagcgagtcccgaatggagacgaagcgaagaaggaggacgaagctgtg
aacggagcatcatcatcatcatcatcatcgggacgcagcgtcgatgataaactggacttt
gacgcgtcgccgcttctgtcggagcgtcacgccgcctgtcaggctgctcagagatcagtg
agagagatccaggagcgtctgtcctccatggtgctgcagcacagcagcagagctcaggga
gaacagctggatgcagatgtttcctcctcttcctcttcctccgtcaccgcagcagagagc
cgggagacatctgaggccggagagaggcctgcagagactctgctctcattgtctgtgaag
atgtccgagtatcagaaacatctggccgacttcccccagatgataaagatgtttcctcac
ccagatgttgttgaatgctgtctggtcgtccttcacctcagcaaatcttcctcgtctgtc
tccgagtcgatgcggcacgaagccaaaagtctgctccaaaaatacggaacgagcccctcc
gtcctgaaagcgtcgcagtcattcctcactgaacccgaacccgaacctgtaactgtcact
cagtag
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integrated database retrieval system
