Scomber scombrus (Atlantic mackerel): 133994150
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Entry
133994150 CDS
T10651
Symbol
lig3
Name
(RefSeq) DNA ligase 3
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03410
Base excision repair
Brite
Enzymes [BR:
ssco01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
133994150 (lig3)
DNA repair and recombination proteins [BR:
ssco03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
133994150 (lig3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
133994150
NCBI-ProteinID:
XP_062289352
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All DBs
Position
14:18053141..18071214
Genome browser
AA seq
1004 aa
AA seq
DB search
MQKQLILLAYKTVCTGRQPLARLQLWEVCRVFSASSCFKRLPPPVTHTLTFTQEICHFSF
VSHKRSLLRNDPPHLFLRQCSSNQPDMSEQRFVVEYAKRGTAGCKKCKEKIVKDVVRIGK
VVPNPFSESAGEMKEWYHVKCIFEKLVRARATTKKIEDITDLEGWEELQDEDKEFINKQV
SDLMAKVNASPKKKVQAKSNTTSQLMGPPADPSLNAPRKFSGFTATKAGTSSSPAPSSSP
AKGDLGSPLSAQLCDPRHKDCLFREFRKLCATVAEHNSYNVKTQIIEKFLRKGSAGDKFH
GDLYLTVKLLLPGVVKSVYNLNDKQIVKLFSRIFRSNQDDMVRDLEQGDVSETVRMFFDD
SKSFPPSAKSLLTIQEVDASLTRLAQLTKEDEQQTELEYISKKCTSNDLKCIIRLIKHDL
KMNSGAKHVLDAVDPNAYDAFKASRNLGDVIERVLRNQQDASNGSGPRKLLTVEASLMTP
VQPMLAEACKSIEQAMKKCPNGMYSEIKYDGERVQVHKNGDNFSYFSRSLKPVLPHKVVH
FKEYIPQAFPGGHSMILDAEVLLIDTNTSKPLPFGTLGVHKKAAFQDAKVCLFVFDCIYF
NGVSLMERPLCERRKFLHDNMVEVPNRILFSEMKHVTRGRDLADMITRVIREGLEGLVLK
DIKGTYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGKGSNGGIMSSFLMGCYDPDS
KKWCTVTKCSGGYDDAMLARLQKELDVIKISKEPSKIPGWLKIIKNYYPDFIIRNPERAP
VWEITGAEFSKSEMHTADGISIRFPRMTRIRDDKDWKSATNLHQLKELFRISKENCDFKV
TAGPSNDDKGSSGGDSGGNSPASTSQRSAPPKKTVNSTPPKPKAVKSQPRTPASEAPSAK
KAKKSESVHSNGKAKATAQLVEPRNDKTLLDIFSGVKLFLPVSVQDFDKLRRYFVAYDGD
IVPDYDASSATHTLAEPDEDSQAQKVSPSWIWECIRKRRVVPPC
NT seq
3015 nt
NT seq
+upstream
nt +downstream
nt
atgcagaaacagcttattttattagcttataagactgtctgcacaggccgacaacctctt
gcaagacttcaactctgggaagtgtgtagagtattttctgcctcctcatgttttaaacgt
ctacctccacctgttacacacacattaacatttacccaggaaatctgtcatttctccttc
gtgtcacacaaacggagtctcctccgaaacgatcctccccatcttttcctgcgtcagtgt
tcctccaaccagccagatatgtcagagcagaggttcgtcgtggagtacgccaagcgcggc
actgcaggatgtaagaaatgcaaggaaaaaatcgtgaaggacgtagtgcggatcgggaaa
gtcgtgcccaaccctttcagcgagtctgcgggggagatgaaagagtggtatcatgtgaag
tgcatatttgagaagctggtaagggcgagggccaccacgaagaagattgaggacatcaca
gatctggaaggctgggaggagctgcaggatgaagacaaggagttcattaataaacaagtc
tcagacctgatggccaaagtcaatgcaagtccaaagaagaaggtccaagccaagtcaaac
accaccagccagctgatgggtcctcctgccgacccgtctctcaacgccccacgcaagttc
tcaggcttcaccgctacgaaggccggcacttccagcagcccagcaccatcctcctcacct
gccaaaggcgacctaggcagcccgctgtccgcccagctgtgtgaccctaggcacaaggac
tgcctcttcagagagtttcgtaagctctgtgccacggttgcagaacacaacagctacaat
gtcaagacacaaattattgagaagttcctcaggaagggctcagctggagataagttccat
ggagatctttacctgacagtgaaactgctcctgccgggcgtcgttaaaagtgtctacaac
ctcaatgacaagcaaattgtgaaactcttcagccgcatattcagaagcaaccaggatgac
atggtgcgcgatttggagcagggcgatgtgtctgagacagtgaggatgttctttgacgac
agtaaatcatttcctccgtctgccaagagtctcctcaccatccaggaagtagatgcatcc
ctgacccgccttgcccagctgaccaaagaggatgagcagcagaccgagctggagtacatt
tccaaaaaatgcaccagtaatgacctgaaatgcatcattcggcttattaagcacgacttg
aagatgaactctggagcaaaacatgtcttggatgcagtggatcccaacgcttacgatgcc
ttcaaggcctcacgtaacctaggtgacgtgattgagcgggtgttgaggaatcagcaggat
gcgtccaacggttcgggacccaggaaactccttaccgtggaggcttcactcatgaccccc
gttcagcccatgttggcagaggcgtgtaaatccatcgagcaggccatgaagaaatgcccc
aatgggatgtattccgagatcaagtatgacggagagcgtgttcaggtccacaagaacgga
gacaacttcagctacttcagccgcagcctcaaaccggtgttaccacacaaagtggtccat
ttcaaagagtacatccctcaggcttttcccggtggccacagtatgatactggatgccgaa
gtcctcctaattgacacaaacaccagtaaacccctgccttttgggaccttaggtgtacac
aagaaagctgcctttcaagatgcaaaggtgtgcctctttgtttttgactgtatctacttc
aatggtgtgagtctcatggagagacctctgtgtgaacgtaggaagttcctgcatgacaac
atggtggaagtcccaaaccggatcctgttctcagagatgaagcacgtcactagaggacga
gatctggctgatatgataactcgcgtcatcagagagggacttgaaggactagtgctaaaa
gacataaagggcacctacgagccagggaagcgccactggcttaaggtgaagaaggattat
ttaaatgaaggcgcaatggcagacacagctgacttggtggtgctgggagccttttacgga
aaaggctcaaacgggggcatcatgtccagttttctaatgggctgttatgacccagactcc
aagaaatggtgcacagtcaccaagtgctccggaggctatgatgacgccatgttggcccgg
ctccagaaagagctggatgtgatcaaaatcagcaaggaaccaagtaaaatccccggctgg
ttgaaaatcatcaagaactactatccagatttcattatccgcaatcctgagcgagcgccg
gtctgggagatcacaggtgcagagttttccaaatcagaaatgcacaccgccgacggcatc
tctatccgctttccccgcatgacacggatccgcgatgacaaagactggaagagtgctacc
aacttgcaccagcttaaagagctgttccgcatatcaaaggagaactgcgacttcaaagtg
acagccggaccgtccaatgacgacaagggctcgtcaggaggggacagcggaggaaactcc
ccggcgtccacgtcccaaagaagcgctccacccaagaagaccgttaacagcactccgccc
aaaccgaaggcggtgaaatctcagcctcgcactcccgcctcagaagcacccagcgccaag
aaggcaaagaagagtgaaagtgttcacagcaatggaaaagcaaaggcaaccgctcagctg
gtggagccaagaaatgacaagacactgctggacatcttcagcggggtgaagcttttcctg
cctgtctcagtgcaggactttgacaaactgagacgatactttgtggcgtatgatggagac
atcgtaccagattatgacgcctcctctgccacacacacgctggctgaacccgatgaggac
agccaggcccagaaagtgtcacccagctggatctgggaatgtatccgcaagaggcgcgtc
gtacctccctgctaa
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