Scomber scombrus (Atlantic mackerel): 133994270
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Entry
133994270 CDS
T10651
Symbol
rad50
Name
(RefSeq) DNA repair protein RAD50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03440
Homologous recombination
ssco03450
Non-homologous end-joining
ssco04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
133994270 (rad50)
03450 Non-homologous end-joining
133994270 (rad50)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
133994270 (rad50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ssco03032
]
133994270 (rad50)
03400 DNA repair and recombination proteins [BR:
ssco03400
]
133994270 (rad50)
DNA replication proteins [BR:
ssco03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
133994270 (rad50)
DNA repair and recombination proteins [BR:
ssco03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
133994270 (rad50)
BRCA1-C complex
133994270 (rad50)
NHEJ (non-homologous end-joining)
MRX complex
133994270 (rad50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
AAA_21
SbcC_Walker_B
AAA_15
SMC_N
ABC_tran
AAA_16
AAA_29
zf-met
AAA_13
AAA_22
Motif
Other DBs
NCBI-GeneID:
133994270
NCBI-ProteinID:
XP_062289489
LinkDB
All DBs
Position
14:22708130..22733919
Genome browser
AA seq
1314 aa
AA seq
DB search
MSKIDKMSILGVRSFGVEDKDKQVISFFTPLTVLVGPNGAGKTTIIECLKYATSGELPPG
SKGGAFVHDPKDAHETDVRAQIRLLFTDVNGEKVTIHRSMSCTQKAKNYSFKSLEQVITR
LNKDGEKERSLSSKCGELDREMISALGVSKSVLNNVIFCHQEESNWPLSEGKALKEKFDS
IFAATKYIKALDTMRQLRLKQSQTVKECQVELRYLKQNKEKAQQIRETVATKEAQLMSSK
DSVQQIENQIDPLENRLMDIDSKLGKVMKLDNDIKALDSRKKQMEEDNKELEETMEQVFQ
GSDEQLQEIYQNHQKTVREKERRLTECQKEQERAGRECQRLNRVKADLLVEQGRLQLEAD
RHTQNIKNRDTEVRSLSSYLEMEGYDRPPFTTLQLESFNRHVTQRLEQEKETVSQVMTDL
QEKEQQKQQSIDEMRDKKTGLERTVELKRDLQGKKQQELRNIRAELQRLEGSSSRLQELE
NELSKAERELQSTMQSSNVDELKVEVVELQKEKAELDRTQRQLDQEMEMLNTHTTARTQM
DMLKKDKMEKEEQVRKIKSRHSEDLVSLLGHFPNKRELEDWIYAKSKEVNTTRDRLAKLN
KDLASSEQNKSHIALELRKKEQQLASDEEKFFNVCGSQDLEQDLNKLQEDLEKISKQRAM
LAGATAVYTQFISQLTEEREPCCPVCQRTFPSDSDLQEVISDMQSKLRLVPDKLKNTEQD
LKRKERKKDEMMTLRPVRQSIVQYQEKELPELRNSLQSVNREIERLKNDVEEQETLRGTL
MSEEETAKACLQDISLMDRYLMDLKEVERKIAQQAAKLQGVDLTRTVQQVSQEKQETQHR
LDTTSSKMELKRKLIQDQQDQIQMMKSSVNETRAEKLQLSSDMQKQQQLEDQCVEYTTEI
QTLTRDIRDAKEQLSPLSAALEKLQQEKQELVDRKRQRQEEGQEKINSMKERVKAITTLE
REITKYVDEGKGEYKEQKESELQETNTQLHEAEKNKDKISKEMGNIRQDIDTQKVQERWL
QDNLTLRKRVEELKEVVAKRETLMKDMGNMQVLQLRQERREAERKLDDLKKNRSIALGRQ
KGFEEEILHYRKELREDQYEKADERYKNKMIIMRTTELVIKDLDLYYKALDQTIMKFHSM
KMDEINKIIRDLWRSTYRGQDIEYVEIRSDMDENSSAGVRRRIYNYRVVMVKGDTALDMR
GRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALVEIIKSRSR
QRNFQLLIITHDEDFVELLGRSSYIEHFYRIRKNKDQNSEIAKFSINSLSSYLH
NT seq
3945 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaagatagacaagatgagcatcttaggggtgaggagctttggggtcgaggataaa
gacaaacaagtcatctctttttttactcctctgactgtgctggttggacccaatggagcg
gggaaaacgactataattgagtgccttaagtatgcaacatcaggagaacttccccctgga
tctaaaggaggtgcatttgttcatgatccaaaggatgcccatgagacagacgtgcgagca
cagattcgactcttattcaccgacgtcaacggagagaaagtgaccatccatcgctccatg
tcctgcactcagaaggcaaagaactactccttcaaaagcttagagcaggtcatcaccaga
ttaaacaaagacggcgagaaggaaagaagcttgtcatccaagtgtggtgaactggaccgt
gagatgatttctgcactaggcgtgtcaaagtctgtgctgaataacgtcatcttctgtcac
caagaagagtctaactggccacttagcgagggcaaagcactcaaagagaagtttgactcc
atcttcgctgcaaccaagtatatcaaagctctggacacgatgcgtcagctgcgtctaaaa
cagagccagacagtcaaagagtgtcaggtggagctgcgctacttgaaacagaacaaggag
aaagcccagcagattagagagaccgtggccacaaaggaggctcagctgatgtcctctaaa
gacagcgtccagcagatagagaaccagattgatccacttgagaatcgactgatggatatt
gactcgaaactggggaaggtgatgaagctggacaatgacatcaaagctttagacagcagg
aagaaacagatggaggaggacaacaaggagctggaggaaaccatggaacaggtgttccag
ggctcagacgagcagctgcaggagatttaccagaaccatcagaagacggtgagggagaag
gagcggagactgacagagtgccagaaggagcaggagagagctggtcgggagtgtcagaga
ctcaatagagtcaaggctgatctgctggtagaacaaggtcgtctacagctggaagctgac
cgccacactcaaaacatcaaaaaccgtgacactgaggttcgttctttgtcatcatacctg
gaaatggagggttatgaccgaccgcccttcacaactcttcagcttgagagcttcaatcgt
cacgtcacacagagactggaacaggaaaaagagacagtcagtcaggttatgacggacttg
caggaaaaggagcagcagaagcagcagtccattgatgaaatgagggataaaaagactggc
ctggagagaacagtggagctgaagagagacctgcagggaaagaaacagcaagaactgagg
aatatcagggcagagctgcagagactggagggttcctctagccgactgcaggagctggaa
aatgaattgtcaaaagcggagcgtgagctgcagagcacaatgcagagctccaatgtggac
gagctgaaagtcgaggttgtggagcttcagaaagaaaaggctgaacttgaccgcacacag
agacagctcgaccaagagatggagatgcttaacacacacacaactgcacgcacacagatg
gacatgttgaaaaaggacaagatggagaaggaggagcaggtacgcaagatcaagtctcgc
cacagcgaggatctagtgtcgttgctgggccactttcccaataaaagagagctggaggac
tggatctatgccaagtctaaggaagtcaacactaccagggacagacttgccaaactcaat
aaggacctggcatcaagtgagcagaataaaagccacattgctttggagctgcgtaagaag
gagcagcagttagccagtgatgaagaaaagttcttcaatgtgtgtggcagtcaggatctg
gagcaggacctgaacaaactgcaggaagatctggagaaaatatccaaacaaagagccatg
ctagctggagccacagcagtttacacccagttcatcagccagctgacagaggagagggag
ccctgctgccctgtgtgccagcggacgttcccgtcagactctgacctgcaggaagtaatt
agcgacatgcagtccaaactgcgcctggtgccagacaagctgaaaaacactgagcaggac
ctgaagaggaaggagaggaagaaagatgagatgatgactcttcgacctgtcaggcagtcc
attgtacagtatcaggaaaaggagttgcctgagttgagaaacagcctgcagagcgtgaac
agagaaattgagaggcttaagaatgatgtggaagagcaggagactctgcggggtaccctg
atgtcagaggaggagacggccaaggcttgcctgcaggacatatctctcatggacagatat
ttgatggaccttaaagaggtggagaggaaaatagctcagcaggcagctaaactccaggga
gtagacctgaccagaactgtccagcaagtcagtcaggagaaacaggagactcaacacagg
ctggacaccacttccagcaagatggagctgaaacgtaaactgatccaggaccagcaggat
cagattcagatgatgaaaagttctgtgaatgagacgagagcagagaaactccagctgagc
agtgatatgcagaaacagcaacagctggaggaccagtgtgttgagtacaccactgagata
cagacgttaaccagggacatcagggacgcgaaggaacagttgtcccctttgtctgctgct
ctggaaaagctgcagcaggagaagcaggagctggtggatcgcaagaggcagagacaggag
gaaggacaggaaaagataaattccatgaaagagagagtaaaggcaatcaccaccttggaa
agagagatcaccaaatacgtcgatgagggcaaaggcgaatacaaagagcaaaaggagtct
gaacttcaagaaaccaacacccagctccatgaagctgagaagaataaagataagatcagc
aaggagatgggaaacatccgtcaggacatagacactcaaaaagtccaggagcgctggttg
caggacaacctgaccttgaggaagcgtgttgaggagttgaaagaagtggtggcgaaacga
gaaactctaatgaaagatatgggcaacatgcaagtcttgcagcttcgccaagaacgacgt
gaagcagaacgcaagttggacgacttgaagaagaaccgcagcattgcattgggtcgtcaa
aaaggctttgaggaggagatactgcattacagaaaagagcttcgtgaagatcagtatgaa
aaagctgatgagcgatacaaaaacaagatgatcataatgaggacaacagagctggtcatt
aaagacctggatctctactataaggcccttgatcaaaccatcatgaaattccacagcatg
aagatggacgagataaacaaaattatcagagacctgtggcgcagcacctacaggggtcaa
gacattgagtacgtggagatcaggtccgacatggatgagaactcatccgctggagtgagg
cggaggatttacaactacagagtagttatggtgaaaggagacacagctttggatatgaga
ggacgctgcagtgccggtcagaaggtgctggcatccctaatcatccgcctggccctggca
gagaccttttgtctgaactgtgggatcctggccttggatgagcctaccaccaacctggac
cgagagaacattgagtcactggcacatgcccttgtagagattattaagagtcgctcacgc
cagcgtaatttccagctgctaatcatcacccacgacgaggactttgtggagctcctgggg
cgttccagctacatcgaacacttctaccgcatccgtaagaacaaggaccagaactctgag
atcgcaaagttcagcatcaactccctctcttcctatctccactga
DBGET
integrated database retrieval system
