Scomber scombrus (Atlantic mackerel): 133994403
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Entry
133994403 CDS
T10651
Name
(RefSeq) short transient receptor potential channel 2-like
KO
K04965
transient receptor potential cation channel subfamily C member 2
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ssco04040
]
133994403
Ion channels [BR:
ssco04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
133994403
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
TRP_2
PKD_channel
Ank_2
Motif
Other DBs
NCBI-GeneID:
133994403
NCBI-ProteinID:
XP_062289634
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All DBs
Position
14:10625756..10632497
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AA seq
1033 aa
AA seq
DB search
MENLTPEQWREIMNKKMQFPPELISAIQEGKTELVRGLLKTGDGIIRQLDDSEDRLWREA
LNLSIRLGGEDVIDALMQGVKFDFRQIHEALLVAVDTNQPHVVKRLLDRLDQEKGNKMDV
HSFSQAIFDHSIDNSQFAPGVTPLTLACQKDLYDIVTMLTLKGHGIPWPHKMSCACLECR
NGRQYDLLKFSLSRINTYRGIASRAYLSITSDDAMLSAFSLSRELRKLSQKEPEFKPQYL
SLEELCQEFAVELLGMCRNQSEVTTILNSCGEQSQDSFDQQAFEEGIPNLSRLRLAVNYN
QKQFVAHPICQQVLSSIWCGKLAGWRGSRTIWKLFVSVGIFITMPLLCLVYWIAPKSKVG
KLLKIPVIKFLLHSASYLWFLITLLGESITMEMYRDIFASRQQNILHSSFHMVWVVGFFW
YECKEVWIEGLRSYFLDWWNCLDMMVLSMYLASFTLRVLIMLKGYVLCPDANSTEECVYF
TQTVRKDWHQEDPQLISEVLFAVTSMLSFTRLAYILPAHESLGTLQISIGKMIDDMMRFM
FILMIIGTAFLCGINNVYVPYVISPHLGRFNETFHFLFWTMFGVANQDYVDMPQFVLAEF
VGRILYGIFTLVIVIVLLNMLIAMITNSFQKIEDDADVEWKFARSKLYLSYFREGLTMPV
PFNIIPSPKAFFYIIRAICRRICCCCCCRNSETKYPPITSMSDEKRSKESQLPYRQQVIR
ALVQRYIESARREFKETKRKDIGNRITELSKAIFRMHNDMKLLHQYLVEEGNPAMTKDSS
SFLGKYIIGAKNNFRGFNSKQDDTNTLLKVTVHNGEEEEDKEKVDTKQESGAQQNQVGEP
GAEGSKRVTDCDVVKMEEGRAKIEQGDKKETEKKEQAETDKNDNSDNEVKGEIAAGASFN
NVEEKVKVEGTQDEADTRKEGEALTGEKVDEKHTDASPEQTENMKVNDEHTDTNKVMNSF
KDIELQEKTVEARWVKGRKFERNIAERSGVKESNEKPGTKKIIPSPTGSSSSQDTGFGSQ
EGQGSIDGMLVSP
NT seq
3102 nt
NT seq
+upstream
nt +downstream
nt
atggaaaacctcacgccagaacaatggcgcgagattatgaacaagaagatgcagttcccg
ccggagctcatcagtgctattcaggaagggaaaacagaactggtacgtggactgttgaag
accggtgatggcatcatccgacagctggatgactcagaagatcgcctgtggagggaggcc
ctcaacttgtccatccgcctgggaggcgaggatgtcattgatgccctcatgcaaggggtc
aagtttgacttccggcagattcacgaggccctgctggttgctgtagacactaaccaacct
catgtggtaaagcgcctgctggaccgcctggaccaggagaaaggcaacaagatggacgtg
cactctttctctcaggccatctttgaccactctattgacaactcccagtttgcccctggt
gtgactcctctgaccttagcctgccagaaagacctgtatgatatagtcacaatgctcacc
ctaaaaggtcacgggatcccatggccacacaagatgtcctgtgcctgtctggagtgccgt
aacggccggcagtatgacctcttgaagttctccttgtctcgcatcaacacctatcgtggc
attgccagccgcgcctacctgtccatcacctctgatgacgccatgctcagcgctttcagc
ctcagcagagagctccgcaagctctcacaaaaagagccagagttcaagcctcagtacctg
agccttgaggagctttgtcaggagtttgccgttgagttgctgggcatgtgtcgcaaccag
agcgaggtgaccactattctgaacagctgtggagaacagagccaggactccttcgaccaa
caggcctttgaggagggaatacccaacctttcacgtctgcgcctcgctgtcaactacaac
cagaagcagtttgtagcccatccaatctgccagcaggtgctgtcatcaatctggtgtggg
aagctggccggctggcgaggcagcaggacaatctggaagctgtttgtgtcagtcgggatt
ttcatcaccatgcccctcctctgccttgtgtactggattgcaccaaagtcaaaggtagga
aagctgctaaagatacctgtgatcaagtttctccttcactcagcctcctacctgtggttc
ctcatcacattacttggagaatcaataaccatggagatgtatcgagacatattcgcttca
aggcagcagaacatcctgcacagttccttccacatggtgtgggtggtcggattcttctgg
tatgagtgtaaggaagtgtggattgaagggctgcggagttacttccttgactggtggaac
tgcttggacatgatggtgctcagcatgtacctggcgtcctttacattacgtgtgctcatc
atgctcaaaggttacgtcctctgccctgatgctaacagcacagaggagtgtgtctacttc
actcagactgtgcgtaaagactggcatcaggaggacccccagctgatttcagaggtgctg
tttgcagtgaccagcatgttgagcttcacacggctggcgtacatcctgccagcccatgag
tctctgggaactctgcaaatctccatagggaagatgattgatgatatgatgagattcatg
tttatactgatgatcattggaacagccttcctctgtggcatcaacaatgtttatgttccg
tatgtcatctctccacaccttggcaggtttaatgagacgttccacttcctgttctggacc
atgtttggcgtggccaaccaggactatgtggatatgccgcagtttgtgttagcagagttt
gttggaaggattctgtatggcatcttcacactcgtcattgtgatcgtcctcctcaacatg
cttattgctatgatcaccaactcttttcagaaaattgaggatgatgcagatgtagagtgg
aaatttgcccggtcaaagctgtatctcagttacttcagagagggcctcaccatgcctgtg
cccttcaatatcatcccctcacccaaagccttcttttacatcataagggctatttgtaga
cgaatctgctgctgctgctgctgtcgtaattctgagacaaaataccctcccataacctca
atgtccgatgaaaagagatctaaagagagccagttaccttaccggcagcaggtgatcaga
gctctggtgcagcgctacatcgagtcagctcgcagggagttcaaggagaccaagaggaaa
gatattggtaatcggatcactgagctgagcaaagccatattcaggatgcacaatgatatg
aagctactgcatcagtatctggtggaagaaggaaaccctgcaatgaccaaggacagctcc
tcttttctggggaaatacatcattggtgccaagaacaatttcagaggttttaacagcaaa
caagatgatacaaatacattgcttaaagtgacagtgcataacggcgaggaagaggaggat
aaagaaaaggttgatacaaagcaggagtcaggagcgcaacagaatcaggtgggcgaaccc
ggagcggagggatcaaagcgggtaaccgactgtgatgtggtgaagatggaggaaggcaga
gctaaaatagagcaaggagataagaaggaaacagagaaaaaagaacaggcggaaacagac
aaaaatgacaatagtgacaatgaagtgaaaggggagatagcagcaggcgcaagttttaat
aacgtagaagaaaaggtaaaagtcgagggcacgcaagatgaggcagatacaagaaaggaa
ggagaggccctcacgggggagaaggtggatgaaaaacacacagacgcgagccccgaacaa
actgaaaacatgaaagtcaatgatgaacacactgacacaaataaagtaatgaacagcttc
aaagacatagagctacaagagaaaacagtggaagcaaggtgggtgaaaggcaggaagttc
gagcgtaatatagcagagaggtctggggtcaaggagagcaacgagaaacctggaaccaag
aagattattccttcaccgacaggcagcagcagctcgcaagatacaggctttggttcccaa
gaggggcagggatcgattgatgggatgctagtgagcccgtaa
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