Scomber scombrus (Atlantic mackerel): 133994406
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Entry
133994406 CDS
T10651
Symbol
vps11
Name
(RefSeq) vacuolar protein sorting-associated protein 11 homolog
KO
K20179
vacuolar protein sorting-associated protein 11
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04140
Autophagy - animal
ssco04148
Efferocytosis
ssco05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
133994406 (vps11)
04148 Efferocytosis
133994406 (vps11)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
133994406 (vps11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ssco04131
]
133994406 (vps11)
Membrane trafficking [BR:
ssco04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
133994406 (vps11)
Hops complex
133994406 (vps11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PEP5_VPS11_N
TPR_PEP5_VPS11
VPS11_N
VPS11_C
Clathrin
zf-C3HC4_2
zf-rbx1
zf-C3H2C3
zf-RING_2
zf-C3HC4
zf-RING_5
TPR_GEMI5
ADIP
zf-ANAPC11
Beta-prop_EML_2
ToxA_N
zf-RING-like
zf_RING_Vps8_fungal
Kbp-5
Motif
Other DBs
NCBI-GeneID:
133994406
NCBI-ProteinID:
XP_062289640
LinkDB
All DBs
Position
14:1759172..1769165
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AA seq
926 aa
AA seq
DB search
MAAFLQWRKFVFFDKDTVKDPGDNGKNFALPNGISACDSGRGHIVLGDMEGKIWLLTRSL
QLASFQAYKLRVTHLYQLKQHSILVSVGQDEHGINPLVKVWNLDKRDSGNPLCTRIFPAI
PGNKPTEVSCLSVHENLNFMAIGFTDGSVVLTKGDITRDRHSKTLTLHEGTIPVTGLAFR
QVAKVTHLFVATLEKVHCYTLSIKEYPKVELDTHGCGLRCSSLADPSQDSQFIVAGDECV
YLYQPDERGPCFAFDGTKLLAHWHRGYLFLLIKDAKSPNKTAFGSRESSPSDKQLLTIYD
LDNKFIAYSASFDDVIDVVAEWGSFYILTRDGKMFVLQEKDTQTKLEMLFKKNLFVMAIN
LAKSQHLDSDGLSEIFRQYGDHLYLKGDHDGAIQQYIRTIGKLEPSYVIRKFLDAQRIHN
LTAYLQALHRQSLANADHTTLLLNCYTKLKDSSKLEEFIKSSESEVHFDVEIAIKVLRQA
SYHSHAVFLAEKHMHHEWYLKIQLEDLKNYHEGLRYIGRLPFEQAESNMKRYGKTLMHHV
PEGTTLLLKGLCTNYQPSGDTAEKESLDRNRVNKANSEEFIPIFANNPRELKAFLEHMIE
VDPRSPQGVYDTLLELRLQDWAHEQDPDRKKVLQGEAVSLLRSDNTVFDKALVLCQMHNF
KEGVLYLYEKGKLYQQIMHYHMQNEEYGKVVEACKRYGDQEGCLWEQALGYFARKEEDCK
AYISEVLHHIDQNNLMPPLLVVQTLAHNSTATLSVIKDYLINKLQRESQQIEDDERKIRQ
YREETSHLRSEIQELKTSAKIFQKTKCNMCNSPLELPSVHFLCSHSFHQHCFESYAESEA
ECPTCTPENRKVMDMLRAQDQKRDLHDHFNRQLRSSNDGFSVVADYFGRGVFNKLTLVTD
PPGSKTVGSLEVNLQRDLLIHTKRNC
NT seq
2781 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgtttctacagtggagaaaattcgtgttctttgacaaagacacggtgaaggat
cctggagataatgggaaaaactttgctcttcctaacggaatatctgcgtgtgactcagga
cggggtcacattgttctgggagatatggaaggcaagatctggcttttgacacgctccctg
cagttggcgtcttttcaggcctacaagttacgggtgacgcatctctaccagctgaagcag
cacagcatcctggtatcagtggggcaggatgaacatggaataaaccctctagtaaaagtt
tggaacctggacaagagagacagtgggaatcctctctgcactaggatttttcctgcaatt
cctggcaacaaaccgactgaagtgtcttgcctcagcgtgcatgagaatctcaacttcatg
gctattggcttcacagacggcagtgtggttctgactaaaggtgacatcaccagagatcgt
cacagtaaaactcttactctgcacgaggggaccatccccgtcacaggcctcgccttccgc
caggtggcaaaggtcacacatctatttgttgccactctggagaaagtccattgctacacc
ctgtccatcaaggagtatcccaaagtagagctggatacacacggctgtgggctgcgctgc
tcctccctcgcagatccctcccaggattcccagttcattgtggcgggagacgaatgcgtg
tacctgtaccagcccgatgaacgagggccctgctttgcctttgatggaaccaaactgttg
gctcactggcatcgaggatatctgttcttactgattaaagacgcaaagtcacccaacaag
acagcgtttggcagcagggagagctctccatcagacaaacagcttctgaccatctatgac
ctagacaacaagttcatcgcctacagtgcctcttttgatgatgtcatcgatgtggtggcg
gagtggggatccttctacatcctcaccagagacgggaaaatgtttgttcttcaggagaaa
gacacacagaccaaactggagatgctgtttaagaagaacctgtttgtgatggccataaac
cttgctaagagccagcacctggacagtgatggactgtcagagatcttcagacagtatggt
gaccacctctacctgaagggagatcatgacggtgccatccagcagtacatccgcactatt
ggtaaactggagccatcttacgtcatcaggaagtttctggatgctcagaggatccacaac
ctgacagcgtatctgcaagctctgcacagacagtctctggccaacgcagaccacaccaca
ctgctgctcaactgttacaccaagctgaaggacagctccaaactggaagagttcattaag
agcagtgagagcgaggtccactttgatgttgaaattgccatcaaggttctccggcaggcg
agctaccacagccacgctgtcttcctggctgagaagcacatgcaccatgagtggtacctg
aagatccaactggaagacctcaagaactaccatgaaggcctgcgttacattggacgttta
ccttttgaacaagctgagagcaacatgaagcgttacggtaagactctgatgcaccacgtt
cctgaaggcaccacgctgctgctgaagggtttatgtaccaactaccaaccgagtggagac
actgctgagaaagaaagcctggacaggaatcgagtcaataaggccaactctgaggaattc
ataccgatttttgcgaacaaccctcgagagctgaaagcattcttggagcacatgatcgag
gtggacccccgctctccacagggtgtttatgacacactgcttgagctacgactgcaagac
tgggcacacgaacaagaccctgatagaaaaaaggtcctgcagggtgaagctgtgtcgctg
ctgaggagtgacaacacggtgttcgataaggctctggtcctctgccagatgcacaacttc
aaagaaggtgtcctctacctttatgagaagggcaagctgtaccagcagattatgcactac
cacatgcagaatgaggagtatgggaaagtggtggaggcttgcaagcgctacggagaccaa
gagggatgcctctgggagcaggcgctgggatactttgctagaaaagaagaagactgtaag
gcctacatcagcgaggtcctgcatcacatcgaccaaaacaacctgatgcctccgttactc
gtggtgcagacactggcccacaactcgacggccactctgtccgtcatcaaggactacctc
atcaacaagctgcagagagaaagccagcagatcgaggacgacgaacgcaaaatccgacag
taccgcgaggagacctctcacctccgctccgagatccaggaactcaaaaccagtgccaag
atattccagaagaccaagtgtaacatgtgcaacagcccgctggagctgccctccgttcac
ttcctgtgcagccactccttccaccaacactgcttcgaaagctacgcagagagcgaggca
gagtgcccaacgtgcactccagagaaccgcaaagtcatggacatgctgcgggcacaggac
cagaaacgagacctgcacgaccacttcaacagacagttacggagctctaacgacggtttc
tcagtggtggctgactattttggtcgaggggtgtttaataaactgactctggtcactgac
ccgcctggcagcaaaacagttgggagtctagaggtgaacctgcagagagaccttctcatc
cacaccaagagaaactgctag
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