Scomber scombrus (Atlantic mackerel): 133994468
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Entry
133994468 CDS
T10651
Symbol
thoc2
Name
(RefSeq) THO complex subunit 2
KO
K12879
THO complex subunit 2
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03013
Nucleocytoplasmic transport
ssco03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133994468 (thoc2)
09122 Translation
03013 Nucleocytoplasmic transport
133994468 (thoc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssco03019
]
133994468 (thoc2)
03041 Spliceosome [BR:
ssco03041
]
133994468 (thoc2)
Messenger RNA biogenesis [BR:
ssco03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
133994468 (thoc2)
Spliceosome [BR:
ssco03041
]
Complex C
Other components
EJC/TREX
133994468 (thoc2)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
133994468 (thoc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
Motif
Other DBs
NCBI-GeneID:
133994468
NCBI-ProteinID:
XP_062289707
LinkDB
All DBs
Position
14:10384391..10410311
Genome browser
AA seq
1564 aa
AA seq
DB search
MATLILRGEWIKNWEKSGKHEFVQLCKELTEKTDHGSEIKDIQAALYELCWQVVQGNLKL
DLASSVLGDMMELRDDMPSILADVFSILDLETGALEEKNKRDHYTQLVGACLFFVPEAIL
KERLDPETLESLGLIKQAHQFNQKIVKIKTKLFYKQQKFNLLREENEGYAKLITELGQDL
SGNITSHLVLESIKSLIGCFNLDPNRVLDIILEVYESRSDQDEFFLSLIKSYMCEPLTLC
HILGFKFKFYQEPNEETPKSLYHIAAALLHHNLIELEDLYVHLMPPDAAIVEEHKRDISE
AKQIARKLVMVVLPSEKNEDKDKEKEKEEEKNEQPPDNQKLGLLEALLRIGDWHHAQSIM
DQMPSFYATSHKAIALALCQLVHLTVEPLYKRAGVPKGAKGCVLHPLRNKRAPRPAEIFE
DLRRDTFSMLCYLGPHLSHDPILFAKIVRLGKGFMKEYQSDGRPDVKDKLETLLSCFLSI
ADQVLLPSLSLMECNACMSEELWGLFKLFPYQHRYRLYGQWKNETYSSHPLLVKVKAQTV
ERAKYIMKRLTKENVKQSGRQIGKLSHSNPTILFDYMLSQIQWYDNLIVPVVDSLKYLTS
LNYDVLAYCIIEALANPEKEKMKHDDTTISSWLQSLASLCGAVFRKYPIELAGLLQYVTN
QLKAGKSFDLLILKEVVQKMAGIEITDEMTSEQLEAMTGGEQLKAEGGYFGQIRNTKKSS
QRLKDALLDHELALPLCLLMAQQRNGVVFLEGGEKHLKLVGHLYDQCHDTLVQFGGFLAS
NLSTEDYIKRVPSIDILCNQFHTPHDAAFFLSRPMYAHQILSKYDELKKAEKGNRQQQKV
QKYVAACEQVMTPVHEAVVSLHPARVWDDLRPQFYATFWSLTMYDLAVPHSAYDREVNKL
KVQIKAIEENPEIPLNKKKKEKERCTALQEKLQEEEKKQLEHVSRVLHRLKLEKDNWLLA
KSTKNETITKFLQLCLFPRCIFSSIDAVYCARFVEMVHQQKAPNFCTLLCYDRVFSAIIY
TVASCTENESHRYGRFLCCMLETVTRWHSDRAIYEKECGNYPGFLTIFRATGFDGGNKVD
QLDYENFRHVVHKWHYMLTKASVHCLETGDYTHIRNILIVLTKILPCYPKVLNLGQALEC
RVHKICLEEKDKRPDLYALAMGYSGRLKSQKVHMVPENEFHHKEQPARSATPANQQNGPG
STGKPATGMGKTEEGTSEEGDRGKDKSQGTTKPVNKANSAAAKVTTSNGNGALNSTKAVK
ERDDKEKSGKEKKDKKEKTPGSTPETKAENRREKQRDERAGKEERAAREGKEKTPKADRE
KVKAEEKNSKDDKAKAGNGEPMEPSRERDAIKESKSKEKGDRSTAAGSIKSPVPRSESAE
SERDHKRRKLDSHSSPSHSSSVKDNNNEPKESTSKHHVNYNSVARSKSREREMEKKDSEN
TQGRSKEKKEEKDRKERKRDHAVNDREASQESKRRKDENGTNSSKNSKSASPSCDSPLSA
EKEKSKRSKSSSKEKGESVKPERTSSGGKKESRHDKEKSEKKEKRDSSGGKEEKKHHKSS
DKHR
NT seq
4695 nt
NT seq
+upstream
nt +downstream
nt
atggcgacacttatcctccgtggtgaatggataaaaaactgggaaaaatcaggaaaacac
gaattcgtacaactctgcaaagagcttacagagaaaacagatcatggaagtgagattaaa
gatatacaggcggccttatatgagctctgctggcaagttgtacaggggaacctgaagttg
gatcttgcctccagcgtccttggggacatgatggaactcagagatgacatgccatcaatt
ttagcagatgtattcagtattctagatttagagactggtgcactagaagaaaaaaacaaa
cgtgaccattacacacaattggtgggagcatgtttgttttttgttccagaggccatcttg
aaagagcgactggacccagaaacccttgaatcccttggacttataaaacaagcccatcag
ttcaaccagaagattgtaaaaatcaagactaaactattttacaagcaacagaagttcaac
ttgctaagggaggagaatgagggctatgccaaactcatcaccgagcttggccaagacctg
tcgggcaacatcaccagccacctcgtactggagagcatcaagtccctcataggatgtttc
aacttagatccgaatcgtgttttggacataatcttggaggtgtacgagagtcgatcagac
caagatgagttcttcctgtcactcatcaagtcctacatgtgtgagccgctcactctctgc
cacatcctgggctttaagttcaaattttaccaggaacctaatgaggaaacccccaagtca
ctttaccacattgctgctgctctgcttcaccataacctgatagagctggaagatctctac
gtacatcttatgccaccagatgccgccattgtagaggaacacaaacgagatatctcagag
gccaagcagattgctcgcaagttggtcatggtagtgctaccctcagagaaaaatgaagac
aaagacaaggaaaaagaaaaggaggaagagaagaatgaacagccacctgacaaccagaag
cttggtctgttggaagcgctacttaggattggagactggcaccatgctcagagtattatg
gaccagatgccttccttctatgcgacttctcacaaggccatcgcactggcactctgccag
cttgtgcacctgactgtggaacctctctacaaaagggctggcgtcccgaaaggagcaaaa
ggatgtgtgctgcatccactgaggaacaagcgggcccctcgacctgcagagatctttgaa
gacttgcgcagggacacattcagcatgctatgctacctgggccctcacctctcccacgac
cccatcctttttgccaagattgtgcgtctgggcaagggtttcatgaaagagtaccaaagt
gatggcagacctgatgtcaaagacaaactggaaacgctgctgagttgtttcctgagcatt
gcagaccaggtgctactcccttctctctctctgatggagtgtaatgcttgcatgtctgag
gaactgtggggtctcttcaaactctttccttaccagcacaggtaccggttatatggacaa
tggaagaacgagacatattccagccatccgctgttggttaaagtcaaagcccagactgtg
gaaagggccaaatacattatgaagcggttgaccaaagagaatgtgaaacaatctgggagg
cagattggcaagctgagccatagcaaccccaccatcctttttgattatatgctgtctcag
atccagtggtacgacaacctcattgttccagtggtggactctttgaaatacctcacatcc
ctcaactatgatgtcttggcttattgcatcattgaggctctggccaatcccgagaaggag
aagatgaagcatgacgacaccaccatctcctcatggcttcagagcctggcaagtctgtgt
ggagctgtgttcagaaaataccccatagagttggctggcctactccagtatgtcaccaat
cagctaaaagcaggaaagagttttgacctgttgatcctgaaagaggtggtgcagaaaatg
gccggcattgagatcacagatgagatgacgtcagagcagttggaggccatgacaggagga
gagcaactcaaagctgagggcggctactttggccaaatcaggaacactaagaagtcctcg
cagcgcctgaaggatgcattgctggatcacgaattggccctgccactgtgtctactcatg
gcccagcaacgaaatggtgtggtgttcttagaaggtggagagaaacatcttaaactggtt
ggccacctctatgaccagtgtcatgatacattggtgcagtttggcggctttctggcctca
aacctcagcacagaagactacatcaaacgagttccttccatcgacatcctttgtaatcag
ttccacactccacatgatgctgcctttttcctgtctcggccaatgtatgcccatcagatt
ttgtccaagtacgatgagctgaagaaagcagagaaaggcaacaggcagcagcagaaggta
cagaagtatgtggcagcttgtgaacaggtaatgacaccagtgcacgaggctgtggtgtcc
ctccatccggccagggtctgggacgacctccggcctcagttctacgccaccttctggtct
ctcacaatgtacgacctggctgtaccacattctgcctacgaccgtgaggtcaacaagctt
aaggtccagatcaaggccatcgaggagaaccctgagatacccttaaataagaaaaagaag
gagaaggaacgctgcactgccctgcaggaaaaactgcaggaggaggagaagaagcagctg
gagcacgtctcaagggtcctacaccgcctcaaactggagaaagacaactggttgttggct
aaatccacaaagaacgagaccataacaaagttcctgcagctctgtctgttccctcgctgt
atcttctcttctatcgacgctgtgtactgcgcccgctttgttgagatggtccaccagcag
aaggcccccaacttctgcacgctcctgtgctatgacagggtgttctctgcaatcatttac
acggtggccagctgtacagaaaatgagtctcaccgctacggacgcttcctctgctgcatg
ctggagacggtgacccgctggcacagcgaccgagcgatctatgagaaggagtgcggcaat
taccctggtttcctgaccatctttagagccacaggctttgatggagggaacaaagtggat
cagctagattacgagaacttcagacatgtggtgcacaaatggcactacatgctgactaaa
gcttcagttcactgcctggagacgggagattacacccacatccgaaacatcctcatcgtg
cttaccaagatcctgccctgctatcccaaagtcctgaacctgggccaagcgctggagtgc
cgtgtccacaagatctgcctcgaggagaaggacaagaggccagacctctatgccttagca
atgggttattcaggtcggttgaaaagccagaaggtgcacatggtccctgagaatgagttt
caccataaggagcagccagcgcgcagtgccacccctgccaatcagcagaacggccccggc
agcactggcaagcctgccaccggcatgggcaagacagaggaggggacgtcagaggaaggc
gatcggggcaaggacaaatctcaggggaccacaaagccagtgaacaaagccaacagtgca
gcggccaaagtgaccaccagcaatgggaacggtgctctcaacagcaccaaagctgtaaaa
gaaagggacgacaaagagaagagcgggaaggagaaaaaagataagaaggagaagacacca
ggcagcactcctgagacaaaggcagagaaccgtcgggagaagcagagagatgagagagca
gggaaggaggagcgggcggcacgtgagggtaaggagaagacccccaaggcagacagggag
aaagtgaaggccgaggagaagaacagcaaagacgacaaggccaaagccggcaatggggag
cccatggagccgtccagggagcgggacgccatcaaggagtccaagagcaaggagaaaggc
gacaggagcactgcggccgggtccatcaagtctccagttcccagatctgagtcagccgaa
tctgagagggatcacaaaagacgaaagctcgacagccactcttctccgtcccactcctcg
tctgttaaggataataacaacgaacccaaggagtccacatccaagcaccacgtgaactac
aattcagttgcccggtccaagagcagagagagggagatggagaagaaagattcagagaac
acgcaaggccggtccaaagagaagaaggaagaaaaggatcggaaagagaggaaaagagat
catgccgtcaacgatcgtgaggcaagccaagaatccaaacgcagaaaggacgagaacgga
accaattcctccaaaaacagcaaaagcgcgagtccttcctgtgactcacccctttcagct
gaaaaagagaagagcaaaagatccaaatcttccagtaaagaaaagggcgagtctgtgaaa
cctgagcgaacttcctctggaggaaaaaaggagtccagacacgataaagagaagtcagaa
aagaaagagaagagggacagcagcggaggaaaagaagagaaaaaacatcataaatcctct
gacaagcacagataa
DBGET
integrated database retrieval system