KEGG   Scomber scombrus (Atlantic mackerel): 133994468
Entry
133994468         CDS       T10651                                 
Symbol
thoc2
Name
(RefSeq) THO complex subunit 2
  KO
K12879  THO complex subunit 2
Organism
ssco  Scomber scombrus (Atlantic mackerel)
Pathway
ssco03013  Nucleocytoplasmic transport
ssco03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ssco00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    133994468 (thoc2)
  09122 Translation
   03013 Nucleocytoplasmic transport
    133994468 (thoc2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ssco03019]
    133994468 (thoc2)
   03041 Spliceosome [BR:ssco03041]
    133994468 (thoc2)
Messenger RNA biogenesis [BR:ssco03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     133994468 (thoc2)
Spliceosome [BR:ssco03041]
 Complex C
  Other components
   EJC/TREX
    133994468 (thoc2)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    133994468 (thoc2)
SSDB
Motif
Pfam: Tho2 THOC2_N Thoc2
Other DBs
NCBI-GeneID: 133994468
NCBI-ProteinID: XP_062289707
LinkDB
Position
14:10384391..10410311
AA seq 1564 aa
MATLILRGEWIKNWEKSGKHEFVQLCKELTEKTDHGSEIKDIQAALYELCWQVVQGNLKL
DLASSVLGDMMELRDDMPSILADVFSILDLETGALEEKNKRDHYTQLVGACLFFVPEAIL
KERLDPETLESLGLIKQAHQFNQKIVKIKTKLFYKQQKFNLLREENEGYAKLITELGQDL
SGNITSHLVLESIKSLIGCFNLDPNRVLDIILEVYESRSDQDEFFLSLIKSYMCEPLTLC
HILGFKFKFYQEPNEETPKSLYHIAAALLHHNLIELEDLYVHLMPPDAAIVEEHKRDISE
AKQIARKLVMVVLPSEKNEDKDKEKEKEEEKNEQPPDNQKLGLLEALLRIGDWHHAQSIM
DQMPSFYATSHKAIALALCQLVHLTVEPLYKRAGVPKGAKGCVLHPLRNKRAPRPAEIFE
DLRRDTFSMLCYLGPHLSHDPILFAKIVRLGKGFMKEYQSDGRPDVKDKLETLLSCFLSI
ADQVLLPSLSLMECNACMSEELWGLFKLFPYQHRYRLYGQWKNETYSSHPLLVKVKAQTV
ERAKYIMKRLTKENVKQSGRQIGKLSHSNPTILFDYMLSQIQWYDNLIVPVVDSLKYLTS
LNYDVLAYCIIEALANPEKEKMKHDDTTISSWLQSLASLCGAVFRKYPIELAGLLQYVTN
QLKAGKSFDLLILKEVVQKMAGIEITDEMTSEQLEAMTGGEQLKAEGGYFGQIRNTKKSS
QRLKDALLDHELALPLCLLMAQQRNGVVFLEGGEKHLKLVGHLYDQCHDTLVQFGGFLAS
NLSTEDYIKRVPSIDILCNQFHTPHDAAFFLSRPMYAHQILSKYDELKKAEKGNRQQQKV
QKYVAACEQVMTPVHEAVVSLHPARVWDDLRPQFYATFWSLTMYDLAVPHSAYDREVNKL
KVQIKAIEENPEIPLNKKKKEKERCTALQEKLQEEEKKQLEHVSRVLHRLKLEKDNWLLA
KSTKNETITKFLQLCLFPRCIFSSIDAVYCARFVEMVHQQKAPNFCTLLCYDRVFSAIIY
TVASCTENESHRYGRFLCCMLETVTRWHSDRAIYEKECGNYPGFLTIFRATGFDGGNKVD
QLDYENFRHVVHKWHYMLTKASVHCLETGDYTHIRNILIVLTKILPCYPKVLNLGQALEC
RVHKICLEEKDKRPDLYALAMGYSGRLKSQKVHMVPENEFHHKEQPARSATPANQQNGPG
STGKPATGMGKTEEGTSEEGDRGKDKSQGTTKPVNKANSAAAKVTTSNGNGALNSTKAVK
ERDDKEKSGKEKKDKKEKTPGSTPETKAENRREKQRDERAGKEERAAREGKEKTPKADRE
KVKAEEKNSKDDKAKAGNGEPMEPSRERDAIKESKSKEKGDRSTAAGSIKSPVPRSESAE
SERDHKRRKLDSHSSPSHSSSVKDNNNEPKESTSKHHVNYNSVARSKSREREMEKKDSEN
TQGRSKEKKEEKDRKERKRDHAVNDREASQESKRRKDENGTNSSKNSKSASPSCDSPLSA
EKEKSKRSKSSSKEKGESVKPERTSSGGKKESRHDKEKSEKKEKRDSSGGKEEKKHHKSS
DKHR
NT seq 4695 nt   +upstreamnt  +downstreamnt
atggcgacacttatcctccgtggtgaatggataaaaaactgggaaaaatcaggaaaacac
gaattcgtacaactctgcaaagagcttacagagaaaacagatcatggaagtgagattaaa
gatatacaggcggccttatatgagctctgctggcaagttgtacaggggaacctgaagttg
gatcttgcctccagcgtccttggggacatgatggaactcagagatgacatgccatcaatt
ttagcagatgtattcagtattctagatttagagactggtgcactagaagaaaaaaacaaa
cgtgaccattacacacaattggtgggagcatgtttgttttttgttccagaggccatcttg
aaagagcgactggacccagaaacccttgaatcccttggacttataaaacaagcccatcag
ttcaaccagaagattgtaaaaatcaagactaaactattttacaagcaacagaagttcaac
ttgctaagggaggagaatgagggctatgccaaactcatcaccgagcttggccaagacctg
tcgggcaacatcaccagccacctcgtactggagagcatcaagtccctcataggatgtttc
aacttagatccgaatcgtgttttggacataatcttggaggtgtacgagagtcgatcagac
caagatgagttcttcctgtcactcatcaagtcctacatgtgtgagccgctcactctctgc
cacatcctgggctttaagttcaaattttaccaggaacctaatgaggaaacccccaagtca
ctttaccacattgctgctgctctgcttcaccataacctgatagagctggaagatctctac
gtacatcttatgccaccagatgccgccattgtagaggaacacaaacgagatatctcagag
gccaagcagattgctcgcaagttggtcatggtagtgctaccctcagagaaaaatgaagac
aaagacaaggaaaaagaaaaggaggaagagaagaatgaacagccacctgacaaccagaag
cttggtctgttggaagcgctacttaggattggagactggcaccatgctcagagtattatg
gaccagatgccttccttctatgcgacttctcacaaggccatcgcactggcactctgccag
cttgtgcacctgactgtggaacctctctacaaaagggctggcgtcccgaaaggagcaaaa
ggatgtgtgctgcatccactgaggaacaagcgggcccctcgacctgcagagatctttgaa
gacttgcgcagggacacattcagcatgctatgctacctgggccctcacctctcccacgac
cccatcctttttgccaagattgtgcgtctgggcaagggtttcatgaaagagtaccaaagt
gatggcagacctgatgtcaaagacaaactggaaacgctgctgagttgtttcctgagcatt
gcagaccaggtgctactcccttctctctctctgatggagtgtaatgcttgcatgtctgag
gaactgtggggtctcttcaaactctttccttaccagcacaggtaccggttatatggacaa
tggaagaacgagacatattccagccatccgctgttggttaaagtcaaagcccagactgtg
gaaagggccaaatacattatgaagcggttgaccaaagagaatgtgaaacaatctgggagg
cagattggcaagctgagccatagcaaccccaccatcctttttgattatatgctgtctcag
atccagtggtacgacaacctcattgttccagtggtggactctttgaaatacctcacatcc
ctcaactatgatgtcttggcttattgcatcattgaggctctggccaatcccgagaaggag
aagatgaagcatgacgacaccaccatctcctcatggcttcagagcctggcaagtctgtgt
ggagctgtgttcagaaaataccccatagagttggctggcctactccagtatgtcaccaat
cagctaaaagcaggaaagagttttgacctgttgatcctgaaagaggtggtgcagaaaatg
gccggcattgagatcacagatgagatgacgtcagagcagttggaggccatgacaggagga
gagcaactcaaagctgagggcggctactttggccaaatcaggaacactaagaagtcctcg
cagcgcctgaaggatgcattgctggatcacgaattggccctgccactgtgtctactcatg
gcccagcaacgaaatggtgtggtgttcttagaaggtggagagaaacatcttaaactggtt
ggccacctctatgaccagtgtcatgatacattggtgcagtttggcggctttctggcctca
aacctcagcacagaagactacatcaaacgagttccttccatcgacatcctttgtaatcag
ttccacactccacatgatgctgcctttttcctgtctcggccaatgtatgcccatcagatt
ttgtccaagtacgatgagctgaagaaagcagagaaaggcaacaggcagcagcagaaggta
cagaagtatgtggcagcttgtgaacaggtaatgacaccagtgcacgaggctgtggtgtcc
ctccatccggccagggtctgggacgacctccggcctcagttctacgccaccttctggtct
ctcacaatgtacgacctggctgtaccacattctgcctacgaccgtgaggtcaacaagctt
aaggtccagatcaaggccatcgaggagaaccctgagatacccttaaataagaaaaagaag
gagaaggaacgctgcactgccctgcaggaaaaactgcaggaggaggagaagaagcagctg
gagcacgtctcaagggtcctacaccgcctcaaactggagaaagacaactggttgttggct
aaatccacaaagaacgagaccataacaaagttcctgcagctctgtctgttccctcgctgt
atcttctcttctatcgacgctgtgtactgcgcccgctttgttgagatggtccaccagcag
aaggcccccaacttctgcacgctcctgtgctatgacagggtgttctctgcaatcatttac
acggtggccagctgtacagaaaatgagtctcaccgctacggacgcttcctctgctgcatg
ctggagacggtgacccgctggcacagcgaccgagcgatctatgagaaggagtgcggcaat
taccctggtttcctgaccatctttagagccacaggctttgatggagggaacaaagtggat
cagctagattacgagaacttcagacatgtggtgcacaaatggcactacatgctgactaaa
gcttcagttcactgcctggagacgggagattacacccacatccgaaacatcctcatcgtg
cttaccaagatcctgccctgctatcccaaagtcctgaacctgggccaagcgctggagtgc
cgtgtccacaagatctgcctcgaggagaaggacaagaggccagacctctatgccttagca
atgggttattcaggtcggttgaaaagccagaaggtgcacatggtccctgagaatgagttt
caccataaggagcagccagcgcgcagtgccacccctgccaatcagcagaacggccccggc
agcactggcaagcctgccaccggcatgggcaagacagaggaggggacgtcagaggaaggc
gatcggggcaaggacaaatctcaggggaccacaaagccagtgaacaaagccaacagtgca
gcggccaaagtgaccaccagcaatgggaacggtgctctcaacagcaccaaagctgtaaaa
gaaagggacgacaaagagaagagcgggaaggagaaaaaagataagaaggagaagacacca
ggcagcactcctgagacaaaggcagagaaccgtcgggagaagcagagagatgagagagca
gggaaggaggagcgggcggcacgtgagggtaaggagaagacccccaaggcagacagggag
aaagtgaaggccgaggagaagaacagcaaagacgacaaggccaaagccggcaatggggag
cccatggagccgtccagggagcgggacgccatcaaggagtccaagagcaaggagaaaggc
gacaggagcactgcggccgggtccatcaagtctccagttcccagatctgagtcagccgaa
tctgagagggatcacaaaagacgaaagctcgacagccactcttctccgtcccactcctcg
tctgttaaggataataacaacgaacccaaggagtccacatccaagcaccacgtgaactac
aattcagttgcccggtccaagagcagagagagggagatggagaagaaagattcagagaac
acgcaaggccggtccaaagagaagaaggaagaaaaggatcggaaagagaggaaaagagat
catgccgtcaacgatcgtgaggcaagccaagaatccaaacgcagaaaggacgagaacgga
accaattcctccaaaaacagcaaaagcgcgagtccttcctgtgactcacccctttcagct
gaaaaagagaagagcaaaagatccaaatcttccagtaaagaaaagggcgagtctgtgaaa
cctgagcgaacttcctctggaggaaaaaaggagtccagacacgataaagagaagtcagaa
aagaaagagaagagggacagcagcggaggaaaagaagagaaaaaacatcataaatcctct
gacaagcacagataa

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