Scomber scombrus (Atlantic mackerel): 133994477
Help
Entry
133994477 CDS
T10651
Name
(RefSeq) thrombospondin type-1 domain-containing protein 1
KO
K24433
thrombospondin type-1 domain-containing protein 1
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
ssco04990
]
133994477
Domain-containing proteins not elsewhere classified [BR:
ssco04990
]
Thrombospondin domain-containing proteins
Other thrombospondin domain-containing proteins
133994477
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
THSD1_D3
THSD1_N
THSD1_D2
TSP_1
TSP1_spondin
TSP1_ADAMTS
TSP1_CCN
TSP1_CFP_C
Motif
Other DBs
NCBI-GeneID:
133994477
NCBI-ProteinID:
XP_062289720
LinkDB
All DBs
Position
14:14040759..14047621
Genome browser
AA seq
945 aa
AA seq
DB search
MPEAVSLLTFLLALMGYALAGLNIWPSFHVALSNASVFVDFSTKSNHSSNCNTSLSLINT
ETNTTLFTRTLPNDHTAGRVEFNCSCFLYAGTFRFLLRQTSIIAVSHRNGTNGGSRESTT
WLWSSELQVQWPTFHIAVERAGNNSGSFQVRISTNEYFQACSSGLDSALFLEVNYMEYNQ
IGRNNINKVRARTRHPIKPVRSQSIELPCAFPFTERDFIQVALRSPHTTHEVKSSGPLYL
SRIFSYKLLVENANKYKSGCEGTMTVKLVTPPCAHIDGKVLLYKDAGAGRAVAISTGMGA
GGTALMGFGPEEPSSPQLAFNWLTRGENETEFNCSVFYPGRNKYCFRFVFNYSSSPSPAQ
TCLVVHRSADSWGPWQPWSVCSVSCGEGMRERVRECLLPSGVGEMHCTVMEKEQSLCSLE
ECIVLPAPSPSLPPVLVGVAPLGGNMVVVVGISLCLAAILATIVVTVWRKLCQTPQCSSV
RRGSMHSPGGRKLSDEASICGHSLQRPSLSDSHSPPGGMSVGVAQNDGPSLGSQPPPQTL
VIPLSHDPERLSPTGLKMLPPIFGYRLAQQQLKEMKKKGLKEATQMYHVSSSPVHDTLVE
TSASPTSSPVPTPTEFAQSALPLGLQGDTDHSHLHVAVSFSELPTQTSRITPDRLSPRVE
LVLGPPISGHASRGSSKWLDRTADWVEMVERSGLAGMGNSNHKNPNFRRTSSFNDPKPHF
PSSAHSRHFRERSMTQVGSRTLPEGSCWTKGVRERQPYCSYPIPEHGASEWAKSRPQRND
QRRPWIETAVPSLNTGLKHTGTNTNITFEKDAKANLNGTGERQRGGETGGRGGEGISGIG
GPATVTSSSRGMNKLSVDRAEQNWNRRGPSPIQRNILARKLKEAQSFSAVKGRQRSSTFS
TTSSEQRKDRCHSLPMSGDYNNSDGSPYRLSEAEQRMLDLDLTSA
NT seq
2838 nt
NT seq
+upstream
nt +downstream
nt
atgccagaagctgtctcactgctgacttttctgctggcgctcatgggatacgctttggca
gggctcaatatctggccctccttccacgttgcccttagcaacgccagcgtatttgtggac
ttcagcacaaaatccaatcacagttccaattgcaacacgagtctgtctctgatcaacaca
gaaaccaacaccaccctcttcaccaggactctccctaacgaccacactgcgggtcgggtg
gagttcaactgttcatgcttcctgtatgcgggaactttccggttcctgctgaggcagacc
agcatcattgctgtttctcatagaaatgggacaaacggcggtagcagggagagcacaacc
tggttgtggagttcagaactgcaggttcagtggcccacctttcacatcgctgtagagagg
gctggaaacaactcgggatcttttcaggtcaggatatccaccaatgagtactttcaggct
tgttccagcggcctcgactctgctctcttcctagaagtcaattacatggagtacaaccag
attgggcgaaacaacatcaacaaggtccgagcccgcacacgacatccaattaaacctgtc
cgttcccagagcatcgagctgccatgtgccttccccttcacagaaagggacttcatacaa
gtggctctacggtctcctcatacaacacatgaagtgaagagctctgggcctctctatctg
tcccgtatcttttcctataagctactggtagaaaatgccaacaaatataagagtggttgc
gaagggactatgactgtgaagcttgtaaccccaccttgtgcacacatcgatgggaaagtt
ttgctgtataaggatgcaggtgctggaagagcggttgcgatttcaactgggatgggagca
ggaggaacagcactgatggggttcggaccagaggaaccgtcttctcctcagttggccttt
aactggctgactcggggggagaatgagacagaattcaactgctctgtgttttacccaggg
aggaataaatactgcttccgttttgttttcaactacagtagctcccctagtccagcacag
acctgtttggtggttcataggagtgcagactcatggggcccctggcagccatggagtgta
tgtagtgtgagctgtggagaggggatgagggaacgggtgcgggagtgtttgctgccatca
ggtgtgggagagatgcactgcactgtcatggagaaggaacagtccctctgctcactggag
gagtgtatcgtgttgcctgctccttctccatccctccctcctgttcttgttggagttgca
cccctgggtggtaacatggttgtggtggttggtatatcactttgtctggctgcgattctg
gccactattgtggtaactgtgtggagaaagctttgccagacccctcagtgcagctctgtc
cgcagagggtccatgcattcccctggtggacgcaaactttctgatgaggcctccatttgt
gggcacagcctccaaagacctagcctgtctgacagccatagcccaccagggggcatgagt
gtgggtgtggcccagaatgacgggccttccctaggcagtcagcctcccccacagaccctg
gtgatacctctctcacatgacccagaaaggctgtctcccacaggtctgaagatgttgcca
cccatatttgggtaccggttagctcagcagcagttaaaagaaatgaagaagaaggggtta
aaggaggccacacagatgtaccatgtctcttcaagcccagtccatgacaccttggtagag
acatccgcttcacccaccagctcccccgttcccacaccaactgaatttgctcaatcagcg
ctacccttgggcctccaaggcgacaccgatcacagccatttacacgttgcagtttccttt
tcagagttgccaacacagacctctaggatcacgccagatagactgagtccaagagtggag
ctggtcttaggtcctcccatttctggacatgcaagtcggggcagctcaaaatggcttgac
cgcactgctgactgggtggagatggtagagaggagtgggttagcaggaatgggaaattca
aatcataagaatccaaatttccgccggacctccagttttaatgaccctaaaccccatttt
ccatcttctgcacactccagacacttcagagaaaggagcatgactcaggtgggatctcgg
acccttcctgaaggaagctgttggaccaaaggagtgagggagaggcagccgtactgctct
taccccattccagagcatggggcctcagagtgggctaaatccagaccccagagaaatgac
cagaggaggccctggatagagacagctgttccttctctcaacactggactcaaacacaca
ggaaccaacacaaacatcacctttgaaaaagatgctaaagccaacctcaatggcactggg
gaaaggcaaaggggtggtgagacaggaggtagaggtggagagggaatctcagggattggg
ggtccagccacggtgacttccagttctcgtggaatgaacaagctgagtgtggatcgggct
gagcagaactggaaccgccgcggcccatcacctatacagaggaacatcctggcccggaaa
ttaaaggaggctcagtccttttccgcagtcaaagggcgtcagcgcagctccactttcagt
acaacatcctcggagcagaggaaagatcgctgtcactctctgccaatgtctggagactac
aacaacagtgacggctctccatacaggctgagtgaggcagaacagaggatgttggaccta
gatctgacctcagcatag
DBGET
integrated database retrieval system
