Scomber scombrus (Atlantic mackerel): 133994520
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Entry
133994520 CDS
T10651
Symbol
cltca
Name
(RefSeq) clathrin, heavy chain a (Hc) isoform X1
KO
K04646
clathrin heavy chain
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04142
Lysosome
ssco04144
Endocytosis
ssco05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
133994520 (cltca)
04142 Lysosome
133994520 (cltca)
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
133994520 (cltca)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ssco04131
]
133994520 (cltca)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ssco04147
]
133994520 (cltca)
Membrane trafficking [BR:
ssco04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
133994520 (cltca)
Exosome [BR:
ssco04147
]
Exosomal proteins
Proteins found in most exosomes
133994520 (cltca)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_PEP5_VPS11
TPR_COPA_B
TPR_Vps41
Motif
Other DBs
NCBI-GeneID:
133994520
NCBI-ProteinID:
XP_062289777
LinkDB
All DBs
Position
14:complement(6114879..6147372)
Genome browser
AA seq
1586 aa
AA seq
DB search
MKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEGDSQPVKVFDRHSSLAGCQII
NYRTDAKQKWLLLIGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNTEEST
LFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISSKQDVVF
LITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATSGIIGVNRKGQVLSVCVEEENI
IPYITNVLQNPDLALRLAVRNNLAGAEELFARKFNNLFAAGNYSEAAKVAANAPKGILRT
PDTIRRFQGVPTQPGQTSPLLQYFGILLDQGQLNKFESLELCRPVLQQGRKQLLEKWLKE
DKLECSEELGDLVKAVDPTLALSVYLRANVPNKVIQCFAETGQFPKIVLYAKKVGYTPDW
IFLLRNVMRINPEQGLQFAQMLVQDEEPLADITQIVDVFMEYNLIQQCTSFLLDALKNNR
PSEGPLQTRLLEMNLMHAPQVADAILGNQMFTNYDRAHIAQLCEKAGLLQRALEHYTDLY
DIKRAVVHTHLLNPEWLVNFFGSLSVEDSLECLRAMLSANIRQNLQICVQVASKYHEQLT
TQSLTELFESFKSFEGLFYFLGSIVNFSQDPEVHFKYIQAACKTGQIKEVERICRESNCY
DPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPV
VVGGLLDVDCSEDVIKSLILVVRGQFSTDELVAEVEKRNRLKLLLPWLESRIHEGCEEPA
THNALAKIYIDSNNNPERFLRENPFYDSRVVGKYCEKRDPHLACVAYERGQCDQELINVC
NENSLFKSLSRYLVRRKDPELWASVLLESNPFRRPLIDQVVQTALSETQDPEEVSVTVKA
FMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPD
IANIAISNELFEEAFAIFKKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKA
QLQKELVKEAIDSYIKADDPSAYMEVVQAADKSGNWEDLVKFLQMARKKARESYVETELI
FALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHL
GEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRG
YFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQ
AHLWAELVFLYDKYEEFDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYKAVQFYLEF
KPLLLNDLLIVLSPRLDHSRAVNFFSKVKQLPLIKPYLRSVQNHNNKSVNEALNNLFITE
EDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKKDKLY
KDAMQYASESKDTELAEELLSWFLEEDKKECFAACLFTCYDLLRPDVVLETTWRHNIMDF
SMPYFIQVMREYLSKVDKLETSESVRKEEEQATETQPIVYGTPQLMLTAGPSVPVPPQQP
YGYGYQQAPAGYPQAPAAQPGFGYGM
NT seq
4761 nt
NT seq
+upstream
nt +downstream
nt
atgaagagcaagatgaaggcacacaccatgacggacgatgttaccttctggaagtggatc
tccctcaacacagttgcccttgtgactgacaatgccgtctaccactggagcatggagggt
gactctcagcccgtgaaagtcttcgaccgccactccagcctggcaggctgccagattatc
aactaccgcactgacgccaagcagaaatggctcctgctcatcggtatctcagcccagcaa
aatcgggtggtgggagccatgcagctgtactctgttgacagaaaggtttctcagcccatc
gaaggccatgccgccagctttgcccagttcaagatggagggaaacacagaggaatcgact
ctgttctgctttgctgtcagaggccaggctggaggaaagttgcacatcattgaagtgggg
accccaccaactggcaaccagccatttccaaagaaagcagtggacgttttcttccctcca
gaagctcagaacgacttccctgtggccatgcagataagctccaagcaggatgtggttttc
cttattaccaaatatggttacatccacctttatgacttggagacaggcacatgcatctac
atgaaccgcatcagtggagagaccatctttgtcaccgctccacatgaggccacctccggc
attatcggcgtcaacaggaagggacaggtgctgtcagtctgtgtggaagaggagaacatc
atcccttacatcactaacgtgctgcagaatccagatctggctctccgtctagctgtccgc
aacaacctcgctggcgcagaagagctctttgcacgcaagttcaacaacctgtttgcggcc
ggcaactactccgaggctgccaaggtggctgccaatgcaccaaagggtatcctgcgaacc
ccagataccatccgtcgcttccagggtgttcccactcagccaggccagacctcccccctg
ctgcagtactttggcatcctgttggaccaaggccagctcaacaagtttgaatccctggag
ctctgcaggcccgtcctccagcagggacgaaagcagcttttggagaagtggctgaaggaa
gacaagttggagtgctctgaagaactgggcgacctggtgaaggcagtggatcccaccttg
gccctcagtgtctacctgagagccaacgtccccaacaaggtcatccagtgctttgcagag
actggacagttccccaagattgtcctgtacgctaagaaggtgggctacactccagactgg
atcttcctgctgaggaatgtgatgcggatcaacccagaacaaggcctgcagtttgcccag
atgctggtccaagatgaagagccactggctgacattacacagattgtggatgtgttcatg
gaatacaacctgatccagcagtgcacttcattcctcctggacgctctgaagaacaacaga
ccatcagagggaccactgcagactcgcctactggagatgaacctcatgcatgctccacag
gttgctgacgctatcctgggcaaccagatgttcaccaactacgaccgcgcccacatcgcc
caactgtgtgagaaggctggactcctgcagagggctctggagcactacactgacctgtat
gacatcaagcgcgctgtggtgcacacacacctcctcaacccagagtggctggtgaacttc
tttggctcgttgtccgtggaggactcactggagtgcctcagggccatgctgtcggccaac
atccgccagaacctgcagatctgtgtccaggtggcctccaagtaccacgagcagctaacc
acacagtctctcactgagctctttgagtcattcaagagctttgaaggtctgttctacttc
ctgggctctatcgtgaacttcagtcaggaccctgaagttcacttcaaatacatccaggca
gcctgcaagacgggccagatcaaagaggtggagaggatctgtagagagagcaactgctac
gaccctgagcgcgtcaagaacttcctcaaggaagccaaactcaccgaccagctgccactc
atcatcgtctgcgaccgcttcgacttcgtccacgacctggtgctctacctgtaccgcaac
aacctgcagaagtacattgagatctatgttcagaaggtgaatcctagccgtctgcccgtg
gtggttggaggtctcttggacgtggactgctcagaggatgtcatcaagagcctgatcctg
gtcgtcaggggacagttctccactgatgaactggtcgctgaggtggaaaagaggaacaga
ctgaagctcctgctgccctggctggagtctcgtatccatgaaggctgtgaggagcccgcc
acccacaatgccctggccaagatctacatcgacagcaacaacaaccccgaacgcttcctg
agggaaaatcccttctacgacagccgcgtggtgggaaagtactgcgagaagagagaccca
cacctggcctgtgtggcctacgagagaggacagtgtgaccaggagctgattaatgtctgc
aatgagaactcccttttcaagagcttgtctcgctacctggtccgtcgcaaagatcccgag
ctgtgggccagtgtgctgctggagagcaaccccttcagacgtccactcattgaccaggtg
gtgcagacagcgctgtcagaaacccaggacccagaggaggtatcagtcactgtcaaggcc
ttcatgaccgccgacctgcccaacgagctcatcgagctgctggagaagattgtgttggac
aactccgtcttcagtgaacacagaaatctgcagaacctgctgatcctgacagcaatcaaa
gccgaccgcactcgcgtgatggaatacatcaacagacttgacaactacgacgcccccgac
atcgcaaacatcgccatcagcaacgagctcttcgaggaggccttcgccatctttaagaag
tttgacgtcaacacctccgcagtgcaggtgctgatcgagcatattggcaacctggaccgg
gcttacgagtttgcagagcgctgcaatgagccggctgtgtggagccagctggcaaaggct
cagttacagaaggagctggtcaaggaggccatcgactcctacatcaaagctgacgacccc
tctgcatacatggaggtggtacaggctgctgataagagcggaaactgggaggacttggtc
aaattccttcagatggctcgtaagaaggcccgcgagtcctatgtggagacagagctgatc
tttgctttggccaaaaccaaccgcctggctgaactggaggagttcatcaacggacccaac
aatgctcacatccagcaggttggtgaccgctgctacgatgagaaaatgtacgacgctgct
aagctgctgtacaacaacgtctccaacttcggtcgtctggcttcgaccctcgtgcacctc
ggggagtaccaggccgctgtggacggcgcccgcaaggccaacagcacccgcacctggaag
gaggtgtgcttcgcctgcgtggacggaaaggaattcagactggcccagatgtgcggcctc
cacatcgtcgtgcacgctgacgagctggaagagctcatcaactactaccaggaccgcggt
tactttgaggagctgatcaccatgctggaggcggcactgggcctggagcgcgctcacatg
ggaatgttcaccgagctggccatcctctactccaagttcaagccccagaagatgagggag
catctggagctcttctggtccagagtcaacatcccgaaggtcctgagagcagcggagcag
gctcacctgtgggccgagctggtgttcctgtacgacaagtacgaggagttcgacaacgct
atcatcaccatgatgaaccacccaacagacgcctggaaggagggacagttcaaagacatc
atcaccaaggtggctaacgtggaactgtactacaaagccgtccagttctatttggagttc
aagcccttgttactgaatgatctgctcatagtgctctcacccagactggaccactcccgt
gctgtcaacttcttcagcaaggtgaaacagctgccactgatcaagccctacctgcgctca
gtacagaaccacaacaacaaatcagtcaatgaagcacttaacaacctcttcatcacagag
gaggattatcaggcactgaggacatcaatagatgcctacgacaacttcgacaacatctca
ctggcccagcgtctggagaaacacgagctgatcgagtttaggagaattgctgcctacctc
ttcaaaggcaacaaccgctggaaacagagcgtggagctgtgcaagaaggacaagctctac
aaggatgccatgcagtacgcgtcagagtccaaggacacagagctagcagaggagctgctg
tcctggttcctagaggaggacaagaaggagtgttttgctgcctgcttgttcacctgctac
gacctgctgcggcccgacgtggtgctcgagaccacctggaggcacaacatcatggacttt
tctatgccatatttcattcaggtcatgagggagtacctcagcaaggtagataaacttgaa
acctcagagtccgtacggaaagaagaggagcaggcaacagagacgcaacccatcgtctac
ggcacaccccagctgatgctgacagcaggccccagcgtacctgtgccccctcagcaacca
tacggctacggctaccagcaggcgcctgcaggataccctcaggcgccagcagctcagcca
ggcttcggctacggcatgtaa
DBGET
integrated database retrieval system
