Scomber scombrus (Atlantic mackerel): 133994986
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Entry
133994986 CDS
T10651
Symbol
mtrex
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03018
RNA degradation
Brite
Enzymes [BR:
ssco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
133994986 (mtrex)
Messenger RNA biogenesis [BR:
ssco03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
133994986 (mtrex)
Spliceosome [BR:
ssco03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
133994986 (mtrex)
Complex C
U4/U6.U5 tri-SnRNP related factors
133994986 (mtrex)
Ribosome biogenesis [BR:
ssco03009
]
Eukaryotic type
Pre-60S particles
Helicases
133994986 (mtrex)
Transfer RNA biogenesis [BR:
ssco03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
133994986 (mtrex)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
133994986
NCBI-ProteinID:
XP_062290209
LinkDB
All DBs
Position
15:10959610..10981461
Genome browser
AA seq
1035 aa
AA seq
DB search
MADAFGDGLFSVFDEEQQSTTSKKIPASLTPEIGKPVGKNGTEAGPSPKAKREADSDGGE
EVVFSKKPRHEAVSANEVNLAEFMPQVKVEQVETVEGCSHEVALPSSDEYKPLKPRVGKA
AKEYPFILDPFQREAILCIDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPIK
ALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEIMREVAWVVFD
EIHYMRDLERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVVYTDYR
PTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDTGDSGGSSGGGKWDPRGRKG
GTRGPSSVFKIVKMIMERNFQPVIIFSFSKKECEAYALQVAKLDFNGDDEKRLVEEVFNN
AVDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLLKALFATETFA
MGINMPARTVLFTSARKFDGKNHRFITSGEYIQMSGRAGRRGMDDRGIVIFMVDEKMSPA
VGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRALPGVVEKMK
KLEEQYHTIEIPNEEGVVTYFKIRQQLAKLGKEIQEFVHKPKYCLPFLQPGRLVKVKSED
ADFGWGVVVNFCKKSNVKTSTDLEPLYVVEVLVHCSKESVKDAATEAAKPAAPGETGEMQ
VVPVMLNLLTSISSVRLYIPKDLRPYDNRQLMLKSIQEVQKRFPDGVPLLDPVDDMGIKD
PALKKVIQKVEAFEHRMYSHPLHSDPNLESVYSLCEKKALIAADVRTAKRELKKARTVLQ
MDKLKCRKRVLRRLGFASPSDVIEMKGRVACEISSADELLLTEMVFNGLFNDLTAEQATA
LLSCFVFQENASEMPKLTEQLAAPLRQMQECAKRIAKVSADAKLEVDEETYLNQFKPHLM
DVVYAWANGATFAQICKMTDVFEGSIIRCMRRLEEVLRQMCSAAKAIGNTELENKFAEGI
TKIKRDIVFAASLYL
NT seq
3108 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcctttggagacggtttgttcagcgtgtttgacgaggaacaacaaagtacc
acaagcaaaaaaatacctgcctcactgactccagaaattggtaaacctgttggtaaaaat
ggcaccgaggctggtccatctcccaaagccaagagggaggcagacagcgacggtggagaa
gaggtggtgtttagcaagaaaccacgacacgaagctgtatctgctaatgaagtcaatctt
gcagaatttatgccccaagtgaaggtggagcaagttgagactgttgaaggatgctcccac
gaggtcgctctgccttctagtgatgaatacaaacccctgaaaccacgagtgggaaaagca
gccaaggagtatccttttattcttgaccctttccagcgcgaggccatcttatgtattgac
aacaaccagtctgtgctcgtgtctgcacacacatctgctggcaagactgtctgtgctgaa
tatgccattgctctggccctcagagagaagcagagagtgatctttaccagccccatcaaa
gccctctccaaccagaagtacagagagatgtacgaagagttccaggatgtgggactgatg
actggagacgtcactatcaaccccaccgcctcctgtctcgtcatgacaacagagatcctg
aggagcatgctgtaccgaggctctgagatcatgagggaagtggcttgggtcgtctttgat
gagatccattatatgagagatttagagcgtggtgtggtgtgggaggagaccatcattctt
cttcctgacaatgtgcattacgtcttcctgtcagccaccatccccaatgccagacaattt
gcagagtggatttgccacctacacaagcagccatgccatgtagtctacacagactaccgt
cccactccgctgcagcactacatcttccctgcagggggcgatggactccacctggtggtt
gatgagaatggagacttcagagaggacaatttcaatacagctatgcaggtgctgagagac
accggggattctggaggcagcagtggaggcggcaaatgggacccgagaggacggaaagga
ggaactagaggtccatccagtgtgttcaagatagtgaagatgatcatggagaggaacttc
cagcctgtcatcattttcagcttcagcaagaaagagtgcgaggcctacgctctgcaggtg
gccaaactggacttcaatggggatgatgagaaacgcctggtggaggaagtgttcaacaac
gcggtggactgtctgtccgacgaagacaagaagctcccccaggtggagcatgtgctgccg
ctgttgaagagggggataggaatccatcatggaggcctactgcccatcctgaaagagact
atagagatccttttctctgaaggtttgctcaaggctctgtttgccacagagacattcgcc
atgggcatcaacatgcctgctcgcactgtgctcttcacgagtgcccgcaagtttgatggc
aagaatcaccgctttataacttcaggtgagtacatccagatgtctgggcgcgctgggagg
agaggaatggacgacaggggaatcgttatcttcatggtggacgaaaagatgagtccagct
gtgggcaaacagctactcaagggctcagcagaccctttgaacagtgctttccacctgacc
tacaacatggtgctcaacctgctgcgtgtggaggaaatcaacccagagtacatgctggaa
aagtctttctaccagttccaacactacagggctttgcctggtgtcgtggagaaaatgaag
aaattggaggagcagtaccacaccattgagattcccaatgaagaaggcgtggtcacttac
ttcaaaatcagacagcagctggccaaactgggcaaagagatacaagagtttgtccataaa
cccaaatactgcttgcccttcctgcagcctgggcgtcttgtcaaggtaaaaagtgaagat
gctgactttggctggggagttgttgtaaacttttgcaagaagtctaatgtgaagaccagc
acagatttagagccactgtacgtggtggaggtcttggtccactgtagtaaagagagtgta
aaagatgcagcgactgaggctgctaaacctgctgctccgggggagactggagagatgcag
gtggtcccagtgatgctcaatctcctgacttccatcagctcagttcgtctttacatcccc
aaagacctgaggccctatgacaacagacagcttatgctcaagtctatacaggaggtgcag
aagcgtttcccggatggcgttcctctgctcgaccctgtagatgacatgggtatcaaagac
cctgcactgaagaaagttattcagaaggtggaggcctttgagcaccgcatgtactcccac
ccactgcatagtgaccccaatttggaatctgtctattctctctgtgagaagaaagctctg
attgcagcagatgttcgaacagccaagcgagagctgaaaaaagctcggaccgtcctacag
atggacaagctgaagtgcaggaaaagagttctgcggcgcctcggcttcgccagtccctct
gacgtcatcgagatgaaaggcagggtcgcctgtgaaatcagcagtgccgatgagctcctg
ttgaccgagatggtgttcaacggcctcttcaacgatctgacggctgaacaagctaccgcc
ctgctgtcctgcttcgtctttcaggaaaacgccagtgagatgccaaaactgactgaacaa
ctcgctgcacccttgagacaaatgcaggagtgtgcgaagcgtatcgcgaaagtgtctgca
gatgccaagctggaagtggacgaggagacgtatctaaaccagtttaagcctcacctgatg
gatgtggtgtacgcctgggctaacggagccacatttgctcagatctgcaagatgactgac
gtctttgaagggagcatcatccgctgcatgcgccgtctggaggaggtactgagacaaatg
tgctctgcagccaaggccataggcaacactgaactggagaacaagtttgctgaaggaata
acgaagatcaagagagacatcgtctttgctgccagtctctacctataa
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