Scomber scombrus (Atlantic mackerel): 133995031
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Entry
133995031 CDS
T10651
Symbol
rad23b
Name
(RefSeq) UV excision repair protein RAD23 homolog B
KO
K10839
UV excision repair protein RAD23
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03420
Nucleotide excision repair
ssco04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
133995031 (rad23b)
09124 Replication and repair
03420 Nucleotide excision repair
133995031 (rad23b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03051 Proteasome [BR:
ssco03051
]
133995031 (rad23b)
03400 DNA repair and recombination proteins [BR:
ssco03400
]
133995031 (rad23b)
Proteasome [BR:
ssco03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
133995031 (rad23b)
DNA repair and recombination proteins [BR:
ssco03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
133995031 (rad23b)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UBA
XPC-binding
ubiquitin
UBA_7
Rad60-SLD
Crinkler
Rad60-SLD_2
Dsc3_N
Metal_resist
CUE
UBA_3
OTU1_UBXL
Motif
Other DBs
NCBI-GeneID:
133995031
NCBI-ProteinID:
XP_062290284
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Position
15:complement(12366447..12376745)
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AA seq
404 aa
AA seq
DB search
MQITLKTLQQQTFKIDIDEEETVTTLKERIEQEKGKDGFPVAGLKLIYAGKILNDDTAIK
EYKIDEKNFVVVMVTKPKTASAAAQPSPATSAPSTTAPAAPPASSSSSDNPTERVSTDDK
PEERRSSIADPASTPVGSSEASTNTNLVEEAVSTLVTGPSYDAMVTEMMLMGYEREQVVA
ALRASFNNPDRAVEYLLTGIPGRDQGHATGPDAVVPPVSGAPAVSAGAITVPANTGSSPS
AGGGNPLSFLRNQPQFHVMRQLIQQNAALLPALLQEIGRENPELLQEISNHQEQFIQMLN
EPNPEAVPVGGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGIAGDSAGGGHMSYIQVTPQ
EKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLLQQNFDDD
NT seq
1215 nt
NT seq
+upstream
nt +downstream
nt
atgcagattactcttaaaacccttcagcagcagacgttcaaaatcgacatcgatgaagag
gagacggtgacgacgttaaaggagaggattgaacaggagaaggggaaggacggttttcca
gttgctggactgaaactgatatatgctggtaaaatcctcaacgatgacacagccatcaaa
gagtacaaaatcgatgagaagaactttgtggtcgtcatggtgacaaagcctaaaacggcc
tcagctgccgctcagccttcacctgccacatcagctcccagcactacagctcccgctgca
cctcccgcctcgtcttccagctcggacaacccaacagagcgtgtctctacagatgacaaa
ccagaggagaggcggtcttcgatcgctgacccagcctccacccctgtcggaagctctgaa
gcttcgacaaacacaaacttagtcgaagaggcagtttcaactctagtgacaggcccatca
tatgacgccatggtgactgagatgatgctcatgggctacgagagggagcaggtggtagca
gctctgagagcaagcttcaacaacccagacagagctgtggagtacctgctcacaggtatc
ccgggcagagatcagggccatgctacagggcctgatgcagtggtgcctccagtgagtgga
gctccagctgtgtctgcaggcgctataactgtccctgccaacactggctcttcgccaagt
gctggtggagggaaccccctgagtttcctaagaaatcagccccagttccacgtcatgcga
cagttgatccagcagaatgctgctctgcttcctgcgctgctgcaggagattggcagggaa
aaccctgagctgttgcaggagatcagcaatcaccaagagcagttcatccagatgctgaat
gagcctaatccagaagccgttccggtaggtggaggaggtggggcgggaggagcaggagga
gccggaggagccggaggagccggaggagccggaggagccggaggagccgggggagccgga
gggatagcaggtgattcagccggtgggggtcacatgagctatatccaggtcacgccacag
gagaaagaggccattgagaggctaaaagccttaggatttccagagggacttgttatacaa
gcctactttgcttgtgagaagaacgagaacttggctgcaaacttccttttacaacagaat
tttgatgatgattag
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integrated database retrieval system
