Scomber scombrus (Atlantic mackerel): 133995079
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Entry
133995079 CDS
T10651
Symbol
myo5b
Name
(RefSeq) unconventional myosin-Vb
KO
K10357
myosin V
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04814
Motor proteins
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09140 Cellular Processes
09142 Cell motility
04814 Motor proteins
133995079 (myo5b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssco03019
]
133995079 (myo5b)
04131 Membrane trafficking [BR:
ssco04131
]
133995079 (myo5b)
03029 Mitochondrial biogenesis [BR:
ssco03029
]
133995079 (myo5b)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
ssco04812
]
133995079 (myo5b)
Messenger RNA biogenesis [BR:
ssco03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Cargo complex
133995079 (myo5b)
mRNA cycle factors
P-body specific factors
133995079 (myo5b)
Membrane trafficking [BR:
ssco04131
]
Others
Actin-binding proteins
Myosins
133995079 (myo5b)
Mitochondrial biogenesis [BR:
ssco03029
]
Mitochondrial quality control factors
Mitochondrial dynamics
Retention of mitochondria
133995079 (myo5b)
Cytoskeleton proteins [BR:
ssco04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Myosins
133995079 (myo5b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Myosin_head
DIL
IQ
AAA_16
Myosin_N
AAA_22
Ac76
BTB_SANBR
nSTAND3
Motif
Other DBs
NCBI-GeneID:
133995079
NCBI-ProteinID:
XP_062290350
LinkDB
All DBs
Position
15:473353..516047
Genome browser
AA seq
1809 aa
AA seq
DB search
MSVNELFTKFTRVWIPDPEDVWRSAEITRDYKEGESVLHLKLEDETPLEYSVGQKSNPLP
FLRNPDILVGENDLTALSYLHEPAVLHNLRVRFLESNNIYTYCGIVLVAINPYEQLQIYG
EEVINAYTGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAMRFF
ATVGGSANDTNVEEKVLASSPIMEAIGNAKTTRNDNSSRFGKYIQIGFSRHYHIIGANMR
TYLLEKSRVVFQAEDERNYHIFYQLCASASLPEFKELSLTSAEDFTYTSLGENIFIDGVN
DAEDFQKTREAFTLLGIKENNQSSIFQIIASILHLGNIQICSERDGESCRISRDDVHLQA
FSRLLGVEQQQMQHWLCHRKLVTASETYVKNMSSRQAENARDALAKHIYAHMFDWIVEHI
NKSLQTSSKQHSFIGVLDIYGFETFESNSFEQFCINYANEKLQQQFNSHVFKLEQEEYMK
EQIPWTLIDFYDNQPCIDLIEARLGILDLLDEECKVPKGTDQNWAQKLYKQNSSSAHFQK
PRMSNTSFIINHFADKVEYQCEGFLEKNRDTVYEEQINILKASQFQLVADLFHEKDDVAP
SKSSRVNVRAAKSVPKTPNKEHRKTVGLQFRSSLNLLMETLNATTPHYVRCIKPNDLKES
FSFDSSRAVQQLRACGVLETIRISAAGYPSRWTYPDFFSRYRVLMKKSDVTSSDKKQVCR
NLLETVVKEPDMFQFGKTKIFFRAGQVAYLEKLRADKFRAACIKIQKTVRGWLQRVRYAK
IRRSAVILQRYGRGYLARRFAEQLRLSRAALICQKQFRMVRERRSFLKVRSAVVTIQAFS
RGMFTRRIYHQFLLHHRAMIIQKCVRGWLQRRKFRRARDAAVTLQCAYRRVLAKRRLKQM
KIEARSAEHLKKLNTGMENKIVQLQRKMDEQSKDLRSQNDQLMVTNSGLGSEVTKLQKQL
EHLRSQQDEGQLVSLQEELQRLREELQEAHALRKKLQEEHSTEKLRLHERVEELETENSL
LKTEKDTMNQKILQQSKSIEDDSSVSQREVSLQSELDAERQRYQNLLKEFSRMEQRYDNL
KEELSLTKFHPGHRRNPSNVSSLESDSNYPSISTSEVGDTEDSIQLVEEMGVEKAAMDIS
LFMKLQKRVRELEQERKRLQANADKMEEVAKRKNSEVRSPTSEQETADLAYDNLKRQELE
SENKKLKNDLNELRKTMADRVSQNGSSNELQDGYNVLLSQLRAANEELDARKEEVLILRT
QIVSAAQQQERSEHISNDTEPVDKDEALKAYHGLSESKKLLEAQLQSQSRQHKDELEALH
TQIELLKADIEKKQEILNYTMSLSPEAQVEYSVQQEITRLTNDNLDLKELVEKLEKNERK
LKKQLRIYMKKVQELEVSQAAVQASKSNPELTRQVTVQRKEKDFEGMLEYNKEDEALLVK
NLIADIRPNSVSATVPCLPAYILFMCIRHADYINDDQKVAALLTSTINAIKKVLKKNNDD
FEMTSFWLANTSRLLHCLKQYSGDEVFMTQNTGKQNEHCLKNFDLAEYRQVLSDLSIQIY
QQLIKVAESIIQPMIVSSMLESESIPSLAGVKPMGYRNRSSSMDTDAGGPSSYTLEALIR
QLGQFHAIMSEHGLDPEIVGQVVRQLFNCINAVTLNNLLLRKDVCSWSTGMQLRYNTSQM
EEWLRGNNLYQSKAAATLEPIIQAAQLLQVKKKTSQDAEAICSLCTSLTTQQIVKILNLY
TPLNEFEERVTVAFIRNIQNRLQERNDPPQLLLDTKQTFPVLFPYTPSALSLDTLHIPAS
LSLGFLIRV
NT seq
5430 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtgaacgagctcttcactaagttcacccgggtgtggatccccgacccggaggat
gtgtggaggtctgcagagatcaccagagactacaaggagggagagtctgtgctgcacctt
aaactggaggatgaaacgcctctggagtactcggtgggtcagaagtcgaaccctctgccg
ttcctgcgtaaccccgacatcctggtgggagagaacgacctcaccgctctgagctacctg
cacgaaccggccgtcctgcacaacctgagggtccgcttcctggagtccaacaacatctac
acatactgcggcatcgtgctggtagccattaatccctatgagcagctgcagatctacggt
gaggaggtgatcaacgcctacaccggacagaacatgggagacatggatcctcatatattc
gctgtggctgaagaagcctacaagcagatggccagggacgagaggaatcagtccatcatc
gtgagcggagagtccggagcaggaaagacggtttctgctaagtacgcgatgcgcttcttc
gctacggtcggcggctcggccaacgacaccaacgtggaggagaaggtcctcgcctccagc
cccatcatggaggcgatcggaaacgctaaaacgactcggaacgacaacagcagccgcttc
gggaagtacatccagatcggattcagccgccattatcacatcatcggagccaacatgcgc
acatacctgctggagaagtcccgcgtcgtgttccaggctgaagatgagaggaattaccac
atcttctaccagctgtgtgcctccgcctccttaccagagttcaaagagctcagcctcacc
agcgctgaagacttcacctacacgtctctgggtgagaacatcttcatcgatggagtaaac
gatgccgaagactttcagaagaccagagaagcgtttacactgctggggattaaagagaac
aatcagagcagcatatttcagatcatcgcctccatccttcatctgggaaacattcagatc
tgctccgagagagacggagagtcctgtcgcatctcaagagatgacgtgcacctgcaggcg
ttcagccggctgcttggcgtggagcagcagcagatgcagcactggttgtgtcacaggaag
ttggtgacggcgtctgagacgtacgtgaagaacatgtcgagccggcaggcggaaaacgcc
cgcgacgcgctcgccaagcacatctacgctcacatgttcgactggatcgtcgagcacatc
aacaaatccctgcagacgtcctccaagcagcactccttcatcggggtcctggacatctac
gggtttgagacgttcgagagcaacagcttcgagcagttctgcatcaactacgccaacgag
aagcttcagcagcagttcaactctcatgtgtttaagttggagcaggaggagtacatgaag
gagcagattccctggacgctgatcgacttctatgataaccagccgtgcatcgacctgatc
gaggctcggctcggcatcctggacctgctggacgaagagtgcaaagtgccgaaggggacg
gatcagaactgggcccagaagctctacaagcagaactcgagcagcgctcacttccagaaa
cctcgaatgtccaacacgtccttcatcatcaaccacttcgctgataaggtggagtatcag
tgtgaaggtttcctggagaagaacagagacactgtgtatgaggaacagatcaacatcctg
aaggccagccagtttcagctggtagcagatctgtttcatgagaaagacgacgtcgctcct
tcaaagtcgtccagagtcaacgtccgagcagcgaagtctgtccccaagactcccaacaaa
gagcatcgcaagacggtcggactgcagtttcgcagctctctgaatcttctcatggagacg
ttgaacgctacgacgccgcactacgtccgctgcatcaaacccaacgacctgaaggaatcc
ttctcgtttgactccagccgggcggtgcagcagctcagagcctgtggagtcctggagacg
atccgcatcagtgctgctggatacccgtccaggtggacgtatccagacttcttcagcaga
tatcgagtcctgatgaagaaatctgacgtaacgtcttcagataagaagcaagtctgcaga
aacctgctggagactgtggtgaaggaaccggacatgttccagttcggtaagacgaagatc
ttcttccgggccggtcaggttgcgtatctggagaaactccgagctgataagtttcgagcc
gcttgcattaaaatccagaagacagtgagaggatggctgcagagagtccgctacgctaag
atacgcaggtctgccgtcattctgcagagatacggccgaggatacctggctaggaggttt
gcagagcagctgcgtctgagtcgagccgctctcatctgtcagaaacagttccgcatggtg
agagagagacgaagcttcctgaaggtgagaagcgccgtggtgacgatccaggccttcagc
cgggggatgttcacccgccgcatctaccaccagttcctgcttcaccaccgggccatgatc
atccagaagtgtgtgcgcggctggttgcagaggaggaagttcagacgggcgcgcgacgcc
gccgtcaccctgcagtgcgcctacagacgggtgctcgctaagagacgactcaaacagatg
aagatagaagctcgctctgctgaacacctgaagaaactcaacacgggcatggagaacaag
atcgtccagctacagaggaagatggacgagcagagtaaagatctcagaagtcagaacgat
cagctgatggtgactaacagcggtctgggctcagaagtgaccaagctgcagaaacagctg
gaacatctgcgcagtcagcaggatgaagggcagctggtgtcgctgcaggaggagctgcag
aggctgcgggaggagctgcaggaggcgcatgctctcaggaagaagctgcaggaggagcac
agcactgagaagctgcgtctgcatgagagagtggaggaactggagacagaaaactctctg
ctgaagacggagaaggacacgatgaaccagaagatcctgcagcagtcaaagagcatcgaa
gatgacagcagtgtgtctcagagagaagtgtctctgcagtcagagttggatgctgagcgg
cagcgttatcagaatctcctcaaagagttttccagaatggagcaaagatacgacaacctg
aaggaggagctgtctctcaccaagttccacccgggtcacaggaggaacccgtccaatgtg
agcagcctggagtcggactctaactacccgtccatctccacgtcagaggtgggagacacg
gaggactccatccagctggtggaggagatgggagtggagaaggcagccatggacatcagt
ctgttcatgaagctgcagaagagagtcagagagctggagcaggagaggaagagactgcag
gccaacgcggacaagatggaggaggtggccaagcgcaagaactcggaggtgaggagtcct
acctctgagcaggagacagcagacctggcctacgacaacctgaagagacaggagctggag
tcagagaacaagaagctgaagaacgacctgaacgagctgaggaagacgatggcggatcgc
gtgtcacagaacggctcgtccaatgagctgcaggacggctacaacgtcctgctgagtcag
ctcagagcagccaatgaggagctggacgcccgtaaggaggaagtcctgattctgaggact
cagatcgtcagcgctgcccagcaacaagagaggagcgaacatataagtaatgacacagaa
cccgtcgataaagacgaagctctcaaagcttatcatggactgtctgagtccaagaagctg
ctggaggctcagctgcaatctcagtcccggcagcacaaagatgagttggaggctcttcac
actcagatcgagctgctgaaggccgacatcgagaagaagcaggagatcctgaactacacc
atgtctctgtctccggaggcgcaggtggagtacagcgtccagcaggagatcacccgcctc
accaacgacaacctggacctcaaggagctggtggagaaactggagaagaacgagaggaag
ctgaagaagcagctccggatctacatgaagaaagtccaggagctggaagtgtctcaggca
gcagttcaggccagtaagtctaaccctgagctgacccgtcaggtgaccgtccagcgtaag
gagaaagactttgaggggatgttggagtacaacaaggaggacgaagctctgctggtcaag
aatctgatcgcagacatcagaccgaactctgtgtccgccaccgttccctgtctgcctgct
tacatcctcttcatgtgcatccgacacgccgactacatcaacgacgaccagaaggtggcg
gcgctgctcacctccaccatcaacgccatcaagaaggtcctgaagaaaaacaacgatgac
tttgagatgacgtcgttctggctggcgaacaccagccggctgctgcactgtctgaagcag
tacagcggggacgaggtgttcatgacgcagaacacgggcaaacagaacgaacactgtctg
aagaacttcgacctggccgagtacagacaggtgctgagtgacctctccatccagatctac
cagcagctcatcaaagtggccgagagcatcatccagccaatgatagtgtcgtcgatgttg
gagagcgagagcatccccagcctggcgggcgtgaagccgatgggctacaggaaccgctcg
tccagcatggacacggacgccggcgggccgagcagctacacgctggaggctctgatccga
cagctgggacagttccacgccatcatgagcgagcacggcctcgaccccgagatcgtgggt
caggtggtccgtcagctgttcaactgcatcaacgccgtcacgctcaacaacctgctgctg
aggaaagacgtctgctcctggagcaccggcatgcagctcaggtataacaccagtcagatg
gaggagtggctcagaggtaataacctgtatcagagtaaagctgcagccactctggagccg
atcattcaggctgctcagctgctgcaagtcaagaagaaaacgtctcaggatgccgaagcc
atctgttccctttgtaccagcctcaccacacaacagatcgttaagatcttgaatctttac
acaccgctcaatgagtttgaggagagagtgacggtggcgttcatcaggaacatccagaat
cgtctgcaggagagaaatgatcctcctcagctcctgttggacaccaagcagacgtttcct
gtgttgttcccctacacgccgtccgctctcagcctggacacgctgcacatccctgcatca
ctcagcctcggcttcctcatcagagtctga
DBGET
integrated database retrieval system
