Scomber scombrus (Atlantic mackerel): 133995120
Help
Entry
133995120 CDS
T10651
Symbol
chd1
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssco03021
]
133995120 (chd1)
03036 Chromosome and associated proteins [BR:
ssco03036
]
133995120 (chd1)
Transcription machinery [BR:
ssco03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
133995120 (chd1)
Chromosome and associated proteins [BR:
ssco03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
133995120 (chd1)
SLIK complex
133995120 (chd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD1_Hrp3
CDH1_2_SANT_HL1
CHD1-like_C
Helicase_C
Chromo
HDA2-3
ResIII
DEAD
CHDCT2
Motif
Other DBs
NCBI-GeneID:
133995120
NCBI-ProteinID:
XP_062290406
LinkDB
All DBs
Position
15:28854312..28881931
Genome browser
AA seq
1796 aa
AA seq
DB search
MAGRSEDESVSNSSGESSNSDDESGSGSGSASGSGSGSSSSSSSSSSQSGSSDSGSGSDS
GSQSDSDTEKSKEKIEPPNKSNIDGAEFWKSNPSILAVQRSAMLRKQQLQQQQQEQRQSS
SNSGSDGSSSSDESDSSSGSKRRRNSGSSDSGSGSGSGSGSGSESSAENHSDETASDYEP
SHKIKSRKPPTKMNFRNGKKSSNQRKKKCSSSDDEDDNYKKAASAGPRRQATVNVSYKED
EELKTDSDDLVEVLGEDVPQPEEDEFETLERVMDCRIGRKKATGSVTTVYAVEADGDPNV
NFNQNKEAGDIQYLIKWKNWAHIHNTWETEDTLKLQNVKGMKKLDNFKKKDQEKKRWLKA
ASPEDIEYFNCQEELIDDLHSQYQLVERIIGHSNQKSAAGYPDYLCKWQGLPYSECSWED
GALISRKFQKHIDDYMSRNQSKTIPFRDCKVLKQRPRFVPMKKQPVYIGGDGLELRDYQL
DSLNWMAHSWCKGNSCILADEMGLGKTIQTISFLNYMFNEHQLYGPFLLVVPLSTLTSWQ
REIQLWAPQMNIVVYLGDISSRNMIRTHEWMHAHNKRLKFNILLTTYEILLKDKSFLGSV
NWAFIGVDEAHRLKNDDSLLYKTMMDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFH
SWELFEEDHGKGRDSGYTSLHKELEPFLLRRVKKDVEKSLPAKVEQILRVEMSAIQKQYY
KWILTRNYKALSKGTKGSTSGFLNIMMELKKCCNHCYLIKPPEDNEFLNRAEALQQLIRS
SGKLVLLDKLLLRLKERGHRVLIFSQMVRMLDILADYLRSRQFLFQRLDGSIKGEMRKQA
LDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKRQ
VNIYRLVTKSSVEEDIIERAKKKMVLDHLVIQRMDTTGKTVLHTGAAPSSSAPFNKEELS
AILKFGAEELFKEPEGEEQEPQEMDIDEILKRAETRENDPGPSTVGEELLSQFKVANFSM
MEEEEIDIDSERSQRSWDDIIPEEQRRRMEEEERQKELEEIYLLPRMRNCAKQISFNASE
GRQSRNRRYSGSDSDSTSDRKRPKKRGRPRTIPRENIKGFSDAEIRRFVKSYKKFGGPLE
RLDAIARDAELVDKSENDLKRLAETVHNGCVRTLRENPCGQEKTSGGRRGKVKGPTFRIS
GVQVNAKLVISHEEELAPLHKAIPADPEERKKYMIPCHSKAAHFDIEWGKEDDSSLLIGI
YEYGYGSWEMIKMDPDLNLTHKLLPDDPDKKPQAKQLQTRADYLIKLLSKDLAKKEAQKQ
AGNANSRKRKPRSKKSKTQKTTKMDEVIKSPSSDPPSDKRSDDEDEIEEEEKEVAPAKAP
SRRSRADRVVVVVEEEEEEEEEDAEQEEVSSSGEREVKEKEIKKECKKEKKEESWDIKET
KEPKEKKESKPLEAVHKQEEIMEKNDVKVEVRERTKKASDVPVHITASGENVPISEESEE
LDQKTFSVCKERMRPVKAALKQLDRPEKGLSEREQLEHTRQCLIKIGDHITECLKEYSNP
DLIKQWRKNLWIFVSKFTEFDARKLHKLYKHAIKKRQEIAQAMEQNTRNTNTHSYKHADI
ERLKDNSNQDDSSRDSYSSDRHQPSSRYHESSSSKERHSSESHRKTAGGESRKRPYSSFS
NGKDHRDRDHYRPDSRDRDRQDRYYSDSKHRKLEEFRSSRDHRLDMKDHSHSDHRSSYRY
HSDWQSEQRASASGPRSPRDQRSPYDSRSPMGHRSPFDYSSDHKSTPEQIWSSRKT
NT seq
5391 nt
NT seq
+upstream
nt +downstream
nt
atggctggacgcagtgaggatgaaagtgtaagcaacagcagtggagaatcaagcaattct
gatgatgaatccggttctggatcgggatcagcttccggatctggctcaggctccagctcc
agctcctccagcagcagcagccagtcagggagcagtgactcaggaagtggttcagactct
ggcagccagtcagattcagacacagagaaatccaaggagaagatcgaaccgccaaataag
tcaaacattgatggagccgagttctggaagtccaacccaagtatcctggcagtgcaaaga
tctgccatgctgaggaaacagcagctccagcaacagcaacaagagcagagacaaagctcc
tctaatagtggatctgatgggtcgtcaagtagcgatgaatccgactcatcgagtggctct
aaaaggagaagaaattcaggctcctctgactctggatcgggttctggatccgggagcggt
tctggatcagagtcatcagcagagaaccacagtgatgaaacagcatcagactatgagccc
agtcacaaaatcaaaagcagaaagcctccaaccaagatgaattttcggaacgggaagaaa
agcagcaatcagaggaagaaaaagtgttcttcttctgatgacgaggatgataactataag
aaggcagcgtctgctgggccacggcggcaggccacagtcaacgtcagctacaaggaggat
gaggagctgaagacagactcagacgacctggtggaagttctgggtgaagatgtcccgcag
cctgaggaagacgagtttgaaacactggagagagtgatggactgcaggataggaaggaaa
aaggcgacaggaagtgtgaccactgtatacgctgtagaagcagacggggaccccaatgtc
aatttcaatcaaaacaaagaggctggtgatatccagtacctgataaagtggaagaattgg
gcccacatccacaacacctgggagacggaggacacactcaagttacagaacgtcaaaggc
atgaagaaactggacaattttaagaagaaggatcaggagaaaaagagatggttaaaggcg
gcctcaccagaggacattgagtatttcaactgtcaggaagaactgatcgatgacctacac
tctcagtaccagcttgtagagagaatcataggacattcaaaccagaagtcagcggctggt
taccctgactacctgtgcaagtggcagggtctaccgtactcagagtgtagctgggaagat
ggagctctgatttccaggaagttccagaaacacattgatgactatatgagcaggaaccaa
tccaagaccattccattcagagactgcaaggtgctgaaacaaagacccaggtttgtgcct
atgaagaagcagccagtttacataggaggtgatggactggagctccgagactaccagttg
gacagtttgaactggatggcccactcctggtgcaaagggaacagctgcatactcgctgat
gagatgggtttagggaaaaccatccagaccatctccttcctcaattacatgtttaatgag
caccagttgtacgggcccttcttgctggttgtgcctctttctacattaacctcatggcag
agagagattcagctctgggctcctcagatgaatattgtggtgtacctgggagacatcagc
agcaggaacatgatcaggacacacgagtggatgcacgcccacaacaagagactgaaattc
aacatcctcctcacaacgtatgagattcttctgaaagacaagtcatttttgggcagtgtt
aactgggctttcattggtgtggatgaggcacaccgtctgaagaatgatgactccctcctc
tataagactatgatggacttcaagtccaaccacaggcttctgatcacaggaactccactg
cagaactccctcaaagagctctggtctctgctgcacttcattatgcctgagaagtttcac
tcttgggagctgtttgaggaggaccatggtaaaggcagggactcaggctacacaagcctt
cacaaagagctggagccttttctgctgcgccgagtcaagaaggacgtggaaaaatctctt
cctgccaaagtggagcagatcctcagagtagagatgagtgctatccagaaacagtattat
aaatggatcctgaccaggaactacaaggctctgagtaaaggtaccaaaggcagcacgtca
ggcttcctgaacatcatgatggagctgaagaagtgttgtaaccactgttaccttatcaag
cctccagaggacaacgagttcctcaacagagctgaagccttacagcaactgatccgcagc
agtgggaagctggttctgttggacaagctgctgctccgtttgaaagagaggggccacaga
gttctcatcttctcccagatggtccggatgctggatatcctggctgactacctgaggagc
cgacagttcctctttcagcggttagatggctctatcaaaggagagatgaggaagcaggcg
ttggatcattttaatgctgaaggctcagaggatttctgcttcttgttatcaacgcgtgcg
ggtggtctgggtatcaatctagcatcagctgacacagtggtcatcttcgactcagactgg
aacccccagaatgatctgcaagcccaggccagagcccacagaatcggacagaagagacag
gtgaacatttaccgtctggtgacaaagagctcagtggaggaggacatcattgagagggca
aagaagaagatggtgctggaccatctggtcattcagaggatggacaccacaggaaaaact
gtcctccacaccggtgctgctccttccagttctgcgccgtttaacaaggaggagctgtct
gcaatcctgaagtttggtgctgaagagcttttcaaagagccagagggtgaagaacaggag
cctcaagaaatggacatcgatgagattctcaaaagagctgagacaagagagaatgacccc
ggaccctctacagtgggagaagaactgctgtctcagttcaaggtggctaacttctccatg
atggaagaggaggaaatagacatcgactctgagcgaagccagcggagttgggacgacatc
attcctgaggagcagaggaggaggatggaggaggaggagagacaaaaggagctggaggag
atctacctgctgccacgcatgaggaattgtgccaaacagataagctttaatgccagcgag
ggccggcagagcaggaacaggaggtactctggatccgacagtgactccacctcagaccgt
aagaggccaaagaaacgaggtcggcctcgaaccattccacgagaaaatatcaagggcttc
agtgatgcagagatccggaggtttgtcaagagttacaaaaaatttggaggacctctggaa
aggttggatgctatcgctcgtgatgctgaacttgtagataagtctgaaaatgacctgaag
cgcttggcagagacggttcacaacggctgtgtgagaacacttcgagaaaacccctgtgga
caagaaaagacgtcaggaggcaggagagggaaggtgaagggccccacattcaggatctct
ggtgttcaggtcaatgccaagcttgttatctctcatgaggaagagttggctccactccac
aaggccattcctgctgaccctgaggagagaaagaagtatatgattccatgccactcgaag
gcagcacactttgacattgagtgggggaaggaggacgactccagcctcctcataggaatc
tatgagtatggttacggcagctgggagatgatcaagatggacccagacctcaatctcaca
cacaagctcctaccagacgaccctgacaagaaaccacaggccaaacagctacagaccaga
gcagactacctcatcaagttactaagcaaggacctggccaaaaaagaagctcagaaacaa
gcagggaatgccaattcaagaaagaggaaaccaagaagtaaaaagagcaaaacacagaaa
acaacaaagatggacgaggtgataaagagcccgtcctcagatcctccatcagacaagagg
tcagacgatgaggatgaaatcgaggaggaggagaaggaggtggcaccagcgaaggcaccg
agcagacggagccgagctgacagggtggtggtggtggtggaggaggaggaagaagaggag
gaggaggacgctgagcaggaggaggtttcttcatcaggggaaagggaggtcaaggagaag
gagataaagaaagaatgcaaaaaggagaagaaggaggagagttgggacatcaaggagaca
aaggagccaaaagagaaaaaagaaagcaagcctctggaggcggtacataaacaagaggag
atcatggagaagaatgatgtcaaggttgaggtacgggaacgcacaaagaaagcctctgat
gtgcctgtccatataacagcaagtggagagaacgttccaatatctgaggagtctgaggaa
ctggaccagaagaccttcagtgtgtgtaaagagaggatgaggccagtgaaagcagctctg
aagcagctggacagaccggagaaagggctgtcagagcgcgagcagctggaacacacaaga
cagtgtctcatcaagatcggagatcacatcactgagtgtctgaaggagtattcaaacccc
gaccttatcaaacagtggagaaaaaacctgtggatatttgtctctaaattcactgagttt
gatgccaggaagctacacaaactgtataagcatgcaatcaagaaacgacaggagatcgct
caggctatggagcagaacactagaaacaccaacacccacagctataaacatgcagacatt
gaaaggctgaaggacaactctaaccaagacgacagcagcagggacagctacagctcagac
aggcatcagccttcatctcgataccacgagagcagcagcagtaaggagagacacagctcc
gagtcccacaggaagactgcaggaggagagtctaggaagagaccatactcctccttcagc
aacggcaaagaccacagagacagagaccactacagaccagacagcagggaccgagacaga
caggacagatactacagtgacagtaagcacaggaagctggaggagttccgctccagcaga
gaccaccggctggacatgaaggatcattcccactcagaccatcgctcttcctaccgctac
cactcagactggcagtcagaacaacgggcctcagccagcgggccccgctctccacgagac
cagcgctccccctacgactcccgctcccccatgggtcaccgctcccctttcgactattct
tcagaccacaagagcacaccagagcagatctggagcagccgcaaaacataa
DBGET
integrated database retrieval system
