Scomber scombrus (Atlantic mackerel): 133995180
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Entry
133995180 CDS
T10651
Symbol
sbno1
Name
(RefSeq) protein strawberry notch homolog 1 isoform X1
KO
K26273
protein strawberry notch
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ssco03036
]
133995180 (sbno1)
Chromosome and associated proteins [BR:
ssco03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
133995180 (sbno1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_34
Helicase_C_4
ResIII
PLAC9
Helicase_C
Motif
Other DBs
NCBI-GeneID:
133995180
NCBI-ProteinID:
XP_062290480
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All DBs
Position
15:complement(14072681..14096818)
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AA seq
1403 aa
AA seq
DB search
MDPGQDLLLAALSESGICPNDIGIFDVDSQDVAQPSNTQQSISISALDVGLGTESVDVAR
TEPPAPVPIVTIRHKPQPSTTTFVLNQLNQLPSLGTTVTKQSVTNPIKHTITVTKVVHVT
NAALRGSQTPSTTSVPPSMSTVVPSNKEIQLKDLLRTGSVRTGLKGNSLMELMKLKPPPD
IATPVATATATGQGEMINGIKKEMLGKDAARIWINDDLKMHNFTHPLKLPGMKEEDEAEE
EEEEELGHAETYAEYMPMKLKVGLRHPDPVVETSSLSSVNPPEVWYRLSIPEEVIDRGSL
SALQLEAITYAAQQHETFLPSGDRAAYLIGDGAGVGKGRTIAGVIYENYLLGRKRSLWFS
VSNDLKYDAERDLRDIGAKNIQVHSLNKFKYGKISSKHNGSVKKGVIFATYSSLIGESQS
GGKYKTRFQQLLHWCGEDFDGVIVYDECHKAKNVCPIGSSKPTKTGLAVLELQNKLPKAR
VVYASATGASEPRNMAYMNRLGIWGHKTPFREFGNFIQAVERRGVGAMEIVAMDMKLRGM
YIARQLSFTGVTFKIEEVPLTQKYIHMYNKSVRLWVSAREKFQQAANLMDAEQRMKKSMW
GQFWSAHQRFFKYLCIASKVRRVVQLAREEVHNGKCVVIGLQSTGEARTLEALEEGGGEL
NDFVSTAKGVLQSLIEKHFPAPDRQKLYSLLGIDLSVKKTPSPSETAAELEQKGKKRKGS
ELKKKQKKKPRKHGGLSGTSSDESQSDESDGESGKDSDDSFKSVSSADEDDDFNPFRDES
NDDEEDDPWLIRKEPKKGKEKKKKKKRRKSIDPDSIQSALLASGLGSTRPAFTAPVIPPT
VAAPVKVEAQDSCLTSQDAVEHAQKMKKDLLEKLEELAENLPPNTLDELIDELGGPDNVA
EMTGRKGRVVSNDDGSITYESRSELDVPVEILNLTEKQRFMDGEKHIAIISEAASSGISL
QADRRVKNQRRRVHMTLELPWSADRAIQQFGRTHRSNQVTAPEYVFLISELAGEQRFASI
VAKRLESLGALTHGDRRATETRDLSRFNFDNKYGRNALEIVMKSIVKLDSPLVPPPSNFK
GDFFKEIQSGLIGVGLINLEDRSGTMSLDKDYNNIGKFLNRILGMEVQQQNALFQYFSDT
LAAVIQEAKKNGRYDMGILDLGSGDEKVKKMDCRKFLTPGYTTSGHVELFTVSVERGMSW
EEATHAWAEQNGPDDGFYVQMRNNKKTAILVKEVNTKKRLFLVYRPNTGRQLKLETYADI
KKKFKKVLSEDAKQHWTDQYKLSAKICSHAFWRGNCKKASVGLTCEIGLRCRTYFVLCGS
VLSVWNELEEVLTPVGGTNVKVQIVRLRTEDGQRIVGLIIPANCVSALINKLSTSDQSQQ
LAVQEQQKRLQLHPQSFSHAPNT
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
atggatcctggacaggatttgcttctcgctgctctcagtgagagcggcatttgcccaaat
gatattggcatatttgacgttgattctcaggatgttgcacagccctctaatacacagcaa
tctatctccatcagtgccctggatgttggtttggggactgagtcagtggacgttgctcga
actgagcctccagctccggtccctatagttactatcaggcacaaacctcagccatcaacc
accacgtttgtcttaaatcagctgaatcagttgccgtcactcggaactactgtgaccaaa
cagtccgttacaaaccccatcaaacacaccataactgtcaccaaggtggtccacgtcaca
aatgcagccctgcgaggttcacagacaccttcaactacgagtgtccctccttcaatgtcc
acagtagtgccttcgaacaaagagattcagttgaaagacctcctaaggaccggcagtgtg
aggacaggcctgaagggcaacagtctgatggagctcatgaagctaaagcctccacccgac
attgctacaccagtagcaacggcaacagccacaggtcagggtgaaatgatcaatggaatc
aaaaaagagatgctgggtaaagatgctgccagaatctggattaatgacgacctcaaaatg
cacaactttacacatcctctgaaactcccagggatgaaggaggaggacgaggctgaggag
gaagaggaggaagagttgggtcatgcagagacttacgcagagtacatgccaatgaaatta
aaggttggcctgcggcatcctgatccagtggtggagaccagttccctgtccagcgtaaac
ccgccagaagtttggtacagactgtccatcccagaagaagtcatcgatcgtggcagtctg
tctgctctgcagctggaagccatcacatacgctgctcagcaacacgagacattcctcccc
agcggtgatcgagctgcctatctgatcggtgatggcgctggtgttgggaaaggaagaacg
attgcaggggtcatctatgagaattacctgttaggcaggaagagatcactttggtttagt
gtctcaaatgatttgaagtatgatgctgaaagggatttacgggacatcggagccaagaac
atccaggttcattcactgaataagttcaaatatggcaaaatctcctcaaaacacaacggg
agcgtgaagaaaggcgtgatcttcgccacctactcctccttgataggagagagccaatca
ggagggaagtacaagaccagatttcaacagcttctccactggtgtggcgaggactttgat
ggagttattgtgtatgatgagtgtcataaagccaaaaacgtatgtccaattggatcatcc
aagccgacaaaaactgggcttgcagtgttggaactgcagaacaaactccccaaggctcgt
gttgtgtatgccagtgctacaggtgcctctgaacccagaaacatggcctacatgaaccgg
ttgggcatctggggacataaaacacccttcagagagtttggcaactttatccaagctgtt
gagcgaaggggtgttggcgccatggagattgttgctatggacatgaaactgagggggatg
tacattgcgaggcagttgagtttcacaggtgtgactttcaagattgaggaggttcccctt
actcagaaatacatccacatgtacaacaaatctgtgaggctgtgggtgagcgcacgtgag
aaattccagcaggccgccaacctgatggatgcagagcaacgcatgaagaagtccatgtgg
ggccagttctggtcggctcaccagaggttcttcaaatacctttgcattgcatccaaagtc
cgcagagtggtccagctggccagagaggaagttcacaacggaaagtgcgtggtgatcggt
cttcagtccaccggagaagctcgaacactcgaggcgttggaggaaggaggaggagaactc
aacgactttgtttcaactgcaaaaggagtgctgcagtcgctgattgagaagcactttcca
gctccggaccgacagaagctctacagcctgttaggtatcgacctctcagtgaagaagacg
ccgtctcccagcgagactgcagcagagcttgaacagaagggcaagaaaaggaaaggctca
gagttgaaaaagaagcagaaaaagaagcctcgcaagcacggcggtctgtcgggtaccagc
tcagacgagagccaatcagacgagtcggacggagaatctggtaaagacagcgacgacagc
tttaaatctgtcagctcagcggatgaagatgatgatttcaaccctttcagagacgagtct
aatgacgatgaggaagatgatccttggcttatcagaaaggaaccaaagaaagggaaagaa
aagaagaagaagaaaaagagaaggaagagtattgatccagactccattcaaagtgccttg
ttagcttcagggttgggctccaccaggcctgctttcactgcccctgttatccctcccacc
gtggctgccccagtcaaagtcgaggctcaggatagctgcctaacaagtcaggacgcagtg
gaacacgcccagaaaatgaagaaagatcttctggaaaaactcgaggagcttgctgagaat
ttaccgcccaacactctggacgagctgatagacgagctgggaggacctgacaacgtagcc
gagatgactggccgtaaaggtcgcgtggtcagtaacgacgacggcagcatcacctacgag
tctcgctctgagctggacgtcccggtggaaatcctcaatctcacagagaaacagagattc
atggatggagagaagcacattgccatcatctcagaagctgccagctcgggtatttccctg
caggccgatcgcagagtgaagaaccagcggcggagagtccacatgaccctggagctgccg
tggagtgcagacagagctatacagcagttcgggagaactcacagatcaaaccaggtcacg
gctccagaatacgtcttcctcatatcggagctcgcaggagagcaaagatttgcctccatt
gttgccaaaagacttgagagcctgggcgctctcactcacggagacagacgagcaactgaa
actcgagatctcagcaggtttaattttgacaacaaatacggcagaaacgctctggaaatt
gtgatgaagtcgattgtgaagctcgactctcctctagtgcctccgccctcgaactttaaa
ggggatttcttcaaagagatccagagtggattaataggtgtcggcctcataaatttggag
gacagatctggcacaatgtcactggacaaagactacaacaacatcgggaagttcctgaac
cgtattctaggcatggaggtccagcagcagaacgccctgttccagtatttctccgacact
ctggcagccgtcatacaggaagccaagaagaacggcagatatgacatgggcattcttgat
ctgggctctggtgatgagaaggtgaagaagatggactgcaggaagttcttgacaccaggc
tataccacatctggacacgttgagctcttcacagtcagtgtagagagaggaatgtcgtgg
gaggaagctacgcatgcctgggcagaacagaacggaccagacgatggtttctatgtgcag
atgaggaacaacaagaaaacggccattctggtcaaagaggtgaacaccaagaagaggctg
ttcctcgtctacaggcccaacacgggcaggcagctcaaactggagacgtacgcagacatc
aagaagaagtttaagaaggtcttgtcagaagacgccaagcagcactggacggaccagtac
aagctgtcagcaaagatctgctctcatgctttttggcggggtaactgtaagaaggcgtcg
gtgggtttaacctgcgagatcggccttcggtgtcggacgtacttcgttctgtgcggctcg
gtgctcagcgtgtggaacgagctggaggaagttctcactccggtcggaggaaccaacgtg
aaggtgcagattgtccgtctcagaacagaagacggacagaggatagttggtctgatcatt
ccagcgaactgtgtgtctgcgttaatcaacaagctctccacatcggaccagagccagcag
cttgctgtgcaggagcagcagaagaggcttcagctgcacccccaaagtttcagccacgca
cccaacacatag
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