Scomber scombrus (Atlantic mackerel): 133995263
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Entry
133995263 CDS
T10651
Symbol
cacna1bb
Name
(RefSeq) LOW QUALITY PROTEIN: voltage-dependent N-type calcium channel subunit alpha-1B
KO
K04849
voltage-dependent calcium channel N type alpha-1B
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04010
MAPK signaling pathway
ssco04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
133995263 (cacna1bb)
04020 Calcium signaling pathway
133995263 (cacna1bb)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ssco04040
]
133995263 (cacna1bb)
Ion channels [BR:
ssco04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
133995263 (cacna1bb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Ca_chan_IQ
GPHH
PKD_channel
Phage_TAC_15
Motif
Other DBs
NCBI-GeneID:
133995263
NCBI-ProteinID:
XP_062290585
LinkDB
All DBs
Position
15:17177923..17355032
Genome browser
AA seq
2514 aa
AA seq
DB search
MKKTSPYNSRWAERRSTVVYAVRSATFGSWRMLTLGSEYEDTWAPSPDKKPQPTQQAEGE
PGLTEGTDTCSGDPEEPLWKAAHTDTGQKFDTVLHLDGSSRAGSRDGVRHMVKKHQTLNN
TLWPRRMARFAEDLPTRYGGGAGGAGRGAPGAGRGGARGGGAPGGQRMYKQSMAQRARTM
AIYNPNPVKQNCFTVNRSLFIFREDNLIRKYAKRITEWPPFEYMILATIIANCIVLALEQ
HLPASDKTPMSERLDDTEPYFIGIFCFEAAIKIIALGFAFHKGSYLRNGWNVMDFVVVLT
GILATVGSDFDLRTLRAVRVLRPLKLVSGIPSLQVVLKSIMKAMVPLLQIGLLLFFAIVM
FAIIGVEFYMGKFHHTCFKISTGERAADWPCGQESPARLCPNETQCKEYWTGPNFGITNF
DNILFAVLTVFQCITMEGWVDILYNTNDVVGNTWNWLYFIPLIIIGSFFMLNLVLGVLSG
EFAKERERVEKRQEFLKLRRQQQIERELTGYLEWICKAEEVLLEEEEEIAEEKSPLDGAW
YKRKQNLSVLKRGKAKKGKNDLIGAEEGEDPFVDISSVAPPGSPFGRASVKSSGKMDNSS
YFRRKEKRTRFFIRRMVKAHSFYWIVLCLVGLNTLCVAIVHYNQPEWLTTALYTAEIVFL
GLFLSEMSLKMYGLGVRNYFHSSFNCFDFGVIVGSIFEVIWDMIKPGASFGISVLRALRL
LRIFKVTKYWNSLRNLVVSLLNSMKSIISLLFLLFLFIVVFALLGMQLFGGQFNFEDETP
TTNFDTFPAAILTVFQILTGEDWNAVMYHGIESQGGVRRGMFSSVYFIVLTLFGNYTLLN
VFLAIAVDNLANAQELTKDEEEQEEAANKKLALQKALEVKEVSPMSAANISIAASYSVYS
SPARRILRYNKEQQRTAKAMSVWEQRTNQLRRNNLRASSEALFNELDPEERLRVSSALHL
HPDMKTHLDRPLVVEDRNGDKPSRTPEGGQEEARDPSRQDGVGDNLHAHSRKHHRHRDRN
GESREGGDGRGGRHHTHHSRNRDHNDDGTQTKERRGERSQGHRHHHQAGSPEEEANDVRG
GMEERGHRHHHSHRPPKEGNGMLANGAQGERRGRGGGGGGGGGGGGGGDSNGERKGRSSR
MVRAQQPDAEEDGLASSPLQAMQSSLSLGEKQEDADNQKNSNRASQAGLNSNAIHIPVTI
TAPPGETTIIPMNNIDCDNFRLSEEKKDLEEEEAANGPRQILPYSSMFIFGQTNPVRRLC
HYVVNLRYFEMCILMVITMSSIALAAEDPVQANAPRNNVLKYLDYVFTGVFTFEMVIKMI
DLGLLLHPGSYFRDLWNILDFIVVSGALVAFACSSLMGSQQSVARGTKGKDINTIKSLRV
LRVLRPLKTIKRLPKLKAVFDCVVNSLKNVLNILIVYILFMFIFAVIAVQLFKGKFFYCT
DESKGLEKDCRGQFLDYDRDDVAAQPREWKKYDFHYDNVLWAFLTLFTVSTGEGWPLVLK
HSVDATYEDQGPSPGFRMETSIFYVVYFVVFPFFFVNIFVALIIITFQEQGDKAMSECSL
EKNERACIDFAINAKPLTRYMPENKQSFQYKMWKFVVSPPFEYAIMTLIALNTVVLMMKF
HGAPYLYESMLKYLNIIFTALFTLECILKIIAFGPLNYLKAAWNVFDFVTVLGSITDILV
TEIKTDKLINLSFLRLFRAARLIKLLRQGYTIRILLWTFVQSFKALPYVCLLIAMLFFIY
AIIGMQVFGNIDLNEETAINHHNNFQTFLQALTLLFRSATGEAWHEIMLSCLSNRPCHKD
SGTLGKECGSDFAYFYFVSFIFLCSFLMLNLFVAVIMDNFEYLTRDASILGPHHLDEFIR
VWAEYDPAACGRICYQDMYKLLRFISPPLGLGKKCPNRVAYKRLVKMNMPIADDNTVHFT
STLMALIRTALEIKLASGVLAQHLCDVDLKREINRVWPSLSQKTVDLLVTPHKYNELTVG
KVYAALMIFDYYKQNRAKRLQQQNPSAGPTSKLGALFRPVLPLTNIQEVEPPFPSPKWPL
PPKPEPEAKSEAVPTTTAPLVNRDAMXVTVFSVQNSMKLNQRSAIKHSQSGDVSQAALRP
KGRRKLQRGQSEDVPYSTRPQESVEMKKVENISDTEEYPSLEGHCRAASLPRLNAEYYRS
HPRHAPGTHLAPIVDLSPIRRSASSLTPQYHQEGGLRECNLERPDLAQSSSGSGQVQGQD
RAHHHHHHHRCHRRRDKDKDKKQKSLDRAASVQPSSTVGSFTDPSAEGLSRERARERDRS
RPHERRHHSSAGEKQRYYSCERYGSREQCHAKSAGPSRSTSPGEGPDTVFLKQVTVPVML
PSGSSTPGRGRRQLPQTPLTPRPAVAYKTANSSPLPSGASTATTGHQTRFSRGLSEHERL
VGGYDESPIPVTRIGSDPNLNRQLKDASQQALLEEAEDFQDAVSSHGGGARSARTTSATA
SATHGTAAAPVTVPTTQGRAGVVPNGYHFTLGLNSASGSRGTGSLRERDEEDWC
NT seq
7545 nt
NT seq
+upstream
nt +downstream
nt
atgaagaagacaagtccttacaactcaagatgggcagagagacgatctactgtggtttac
gcggtgcgctcagccaccttcggctcttggaggatgctcaccctggggtcggagtatgag
gatacctgggctccatcacctgacaagaagcctcaacccacgcaacaggcggagggggag
ccggggctcactgagggaacagacacctgcagcggtgacccggaggaacccttatggaaa
gccgctcacaccgacacagggcagaagtttgacacagttttacacttggatggatcgagc
agggctgggagtagagatggtgtgcgtcacatggtcaagaagcaccagaccctgaacaac
acgctgtggccccgcagaatggctcgcttcgcagaagatctacccacccgctatggagga
ggcgcaggcggcgcagggagaggcgcgccgggcgctgggagagggggagcccggggtggc
ggcgctccgggtggccaaaggatgtacaagcagtcgatggcccaaagagcccgaacaatg
gccatttacaacccgaaccctgtcaaacaaaactgcttcaccgtcaaccgctccctcttc
atcttccgagaggacaatctcatcaggaagtatgcaaagcgaataacagagtggcctcca
tttgaatacatgatcctggctacaattatcgccaactgcatcgtcttggccctggagcag
catctacccgccagtgacaagacacccatgtcagaacgcctggacgacacagagccctac
tttattggaatattctgtttcgaggctgccattaagatcatcgccctgggctttgcgttt
cacaaaggctcctacctccgcaatggctggaatgtaatggacttcgtggtcgtcctcaca
ggaatcttggccacggtgggttcagactttgacctgcgaacactacgggcagtgagagtg
ctgagaccccttaaactggtgtcaggaatccccagtctccaggtggtgttgaagtccata
atgaaagccatggttcccctgcttcagatcggcctgctgctcttcttcgccatcgtcatg
tttgctatcatcggggtcgagttttacatgggcaaattccaccacacctgcttcaagatc
agcacgggtgagagagcagcagactggccttgtggtcaggagtccccggccaggttgtgt
cctaacgagacgcaatgcaaagagtactggactggacccaacttcggtatcacaaacttc
gacaacatcctattcgcggtgcttactgtgttccagtgcatcaccatggagggctgggtg
gacatcctctacaatactaatgatgtggtaggaaacacctggaactggctctactttata
cctctcatcatcatcggctccttcttcatgctcaatctggtgcttggtgtcttatcagga
gaatttgccaaagagagagaacgtgtagagaagaggcaagagttcctgaagcttcggagg
cagcagcagatcgagagagagctcaccggatacctggagtggatctgcaaagcagaggag
gtgttgctggaggaggaagaagagattgcagaggagaagtccccgctggacggtgcgtgg
tacaagaggaaacaaaacctttcagtcctgaaacgaggaaaagcaaaaaagggtaagaac
gacctgatcggcgccgaagaaggagaagatcctttcgtggacatctcctctgtcgctcct
cccggctctccgtttggtcgggctagcgtgaagagcagcggtaagatggacaactcctct
tacttccggcgtaaggagaagaggacccgcttcttcatccgccgcatggtgaaagctcac
agcttctactggatcgttctgtgtctggtgggcctcaacactctgtgtgtggccattgtc
cactacaatcaacctgagtggctcacaacagccctctacacagcggagattgtcttcctt
ggtttgtttctctctgagatgtctttgaagatgtacggcctcggagtgaggaattatttc
cactcctcctttaattgctttgattttggggtgattgtgggaagtatttttgaggtgatc
tgggacatgattaaaccaggagcgtcgtttggtatcagcgtgttgagagccctgcgactg
ctcaggatatttaaagtcaccaaatattggaactctttgaggaatcttgtggtttcactt
ctcaattccatgaagtccatcatcagcttgctcttcctcctcttcctcttcatcgtggtc
tttgccctgctgggcatgcagctcttcggaggacagtttaactttgaagacgagacacca
acaacaaactttgataccttcccagcagccatcctcactgtgttccagattctaactggc
gaggactggaacgcagtgatgtaccacgggatcgagtctcaaggaggtgttcgccgcggc
atgttctcctccgtctatttcatcgtcctcacgctctttggaaactacaccctactgaat
gtcttcttggctatcgctgtcgataacctggcaaatgcacaggagctgactaaggatgaa
gaagagcaggaggaggcagccaataagaagctcgccctgcagaaagctttggaggtgaag
gaagtcagccccatgtcagcagccaacatctcgatcgctgcgagttattctgtctactcc
tcccccgcccgacgaatcttgaggtacaataaggagcagcagcggacagcaaaggccatg
tcagtgtgggagcagaggaccaaccagctgaggagaaacaacttgagggcgagcagcgag
gccttgtttaacgagctcgaccccgaggagcgccttcgggtgtcctccgccctccacctg
caccccgacatgaagactcacctggaccggccactcgtggtggaagacagaaacggcgac
aaacccagcaggactcccgaaggaggacaggaggaagccagggacccgtccaggcaggac
ggggtgggagacaacctccacgcgcactccaggaagcaccaccgccaccgagacagaaac
ggggagagcagggagggaggcgacggccgcggagggaggcaccacacccatcacagccgc
aacagagatcacaacgatgacggcacacagacgaaagagaggagaggggagaggagccaa
ggacacaggcaccaccaccaggccggctcccctgaggaggaggccaatgatgtacgagga
gggatggaagaaaggggacatcgccaccaccattcccatcgtccaccaaaagaggggaat
gggatgttggcaaacggtgcacagggagagcgcagggggagaggaggaggaggaggagga
ggaggaggaggaggaggaggaggagatagtaatggagaaaggaagggacgctcctctcgt
atggtcagagctcagcagccagatgctgaggaggacggcctcgcctccagtcccctacag
gcgatgcagagcagccttagtctcggagagaagcaagaggatgccgacaaccagaagaac
tccaaccgggccagccaggccggcctcaacagcaacgccatccacatccccgtcaccatc
accgctccacccggagagaccaccatcatacctatgaacaacatcgactgtgataacttc
cgactgagcgaagagaaaaaagatctggaggaggaggaggcggctaatgggcctcggcag
atccttccctacagctccatgttcatcttcgggcaaacaaacccggtgcggcggctgtgt
cactacgtggtcaacctccgctacttcgaaatgtgcatcctgatggtcattaccatgagc
agcatcgccctggcagccgaggaccctgtgcaagcaaacgcgccgcgcaacaacgttctc
aagtatctggattatgtatttaccggagttttcacttttgagatggtgattaagatgata
gatttgggtcttctcctccaccccggttcttatttccgggacctgtggaacattctggac
ttcattgtggtcagtggagctctggtggccttcgcctgctcgagccttatgggatcgcaa
caaagcgtggccagagggacgaaaggcaaggacataaacaccattaagtccctgagggtc
ctccgagtcctgcgaccactcaagaccattaaacggctccccaagctgaaggctgtgttc
gactgtgttgtaaactctctgaagaacgttctcaacatccttatcgtctacatcctcttc
atgtttatcttcgccgttatcgcagtgcagctctttaaaggcaaattcttctactgcact
gatgagtccaagggtctagagaaagactgcaggggtcagtttctggactacgacagggat
gatgtcgcagctcagcccagagagtggaagaagtacgatttccactatgacaatgttctc
tgggctttcctaacactattcaccgtctccactggagagggctggccactggtcctgaaa
cattctgttgatgccacctacgaggaccaaggtcccagcccaggcttccgcatggagacc
tccatcttctacgttgtgtactttgtggtgttccctttcttcttcgtaaacatattcgtg
gctttgatcatcatcaccttccaggagcagggagacaaggccatgtctgagtgtagcctg
gagaagaatgagagggcttgcattgactttgctatcaacgccaagccgctgaccagatac
atgccagagaacaagcagtccttccagtacaagatgtggaaatttgtcgtatcccctcca
ttcgagtacgccatcatgactttaatcgccctcaacacggttgtgctgatgatgaagttc
catggagctccatacctgtatgagtccatgctgaaatatctaaacatcatcttcacggcc
ctcttcacactggagtgcatcctcaagattattgccttcggtccactgaactacctgaaa
gcagcctggaatgtatttgactttgtgactgtgcttgggagcataacagacatcttggtc
acagagataaagacggacaaattgataaacctgagtttcttgaggctgttcagagcagcc
agactcatcaaactgctgcggcagggctacaccatccgcatcctgctgtggaccttcgtt
cagtccttcaaggccctgccgtatgtgtgcctgctcatcgccatgctgttcttcatctat
gccatcattgggatgcaggtgtttggtaacatcgacctaaatgaagaaactgccatcaat
caccacaacaacttccagacctttttacaggctttgaccctcctcttcaggagtgcgacc
ggcgaggcgtggcatgagatcatgttatcgtgtctcagtaaccggccgtgtcataaggat
tcaggaactttggggaaggagtgcgggagtgactttgcctacttctactttgtctccttc
attttcctctgctccttcctgatgctgaacctatttgttgctgtcatcatggataacttt
gagtacctaaccagggacgcctccatcctggggcctcatcaccttgatgaatttatccgc
gtgtgggcggagtacgaccctgctgcctgcgggaggatatgctatcaggatatgtacaaa
ttgttgcgttttatctcgcctcccctgggccttgggaagaagtgccctaacagggtggct
tataagcgattggttaagatgaacatgcccatcgccgatgacaacacagtgcatttcacc
tccacgctgatggccctgatccgcacagccctggagatcaaactggcatctggggtcctg
gcgcagcatttgtgtgacgtcgacctgaagagggagataaaccgagtttggcccagcctg
tcgcagaagacggtcgacctgctggtgacgccacataaatacaatgagctgactgtgggg
aaagtctacgccgctctaatgatctttgactactataagcagaatcgtgccaagaggctc
cagcagcagaacccttcagcaggacctacaagtaaactgggggccttgttccgtcctgtg
ctgcccctcactaacatacaggaagtggaaccgccgttccccagtcccaaatggcccctg
ccacccaaacctgagccagaagccaagtcagaggctgtgcccactaccaccgctccactg
gttaacagggacgcaatgtgagtgactgtcttttctgtccagaacagcatgaaacttaac
cagaggagtgccataaaacattcccaatctggagatgtttctcaggcagcactgaggccc
aaaggccggaggaaactacagagaggccagtcagaggatgtgccatattccaccagacct
caggaatcggttgagatgaagaaggtggagaatatctcagacacagaggagtatcccagc
ctggaaggccactgcagagcagcgtctctgccccgactgaatgctgagtactaccggagc
caccctcgccacgcccctgggacccacctggcaccgattgtcgacctcagtcctataaga
cgctcggcatcctctctgacgccgcagtaccaccaggagggcgggctgagggaatgtaac
ctggaacgaccagacctggcccagtcctccagcgggtcagggcaagtccagggccaggac
agggctcaccaccatcaccaccaccaccgatgccatcgacgcagggacaaagacaaagac
aagaagcagaagtccctggacagagctgcatcagtgcagccgtccagcactgtcggctca
tttaccgacccttcagctgaaggtttgtccagagagcgagcgagggagcgggaccgcagc
cggcctcacgagaggaggcaccactcctcagcaggagagaagcagcgttactactcctgc
gagcgttacggcagcagggagcagtgccacgccaagtcagccggtcccagtcgatccacg
tctccaggagagggacccgacactgttttcctcaaacaggtgaccgtccccgtgatgctg
ccgtctggttccagcacgcccggccgtggtcgcaggcagctccctcagacacccctcacc
cctcgtcccgctgtggcctacaagaccgccaactcctcgcccctcccgtccggtgccagc
accgctacgacggggcaccagactcgtttcagccgtggcctttcagagcacgagcgctta
gtcgggggctacgacgagtccccgataccggtcactcgcatcggttcagaccctaattta
aaccggcagctgaaggacgcttctcagcaggccctcctagaagaggcggaggactttcag
gacgctgtgagcagccacggagggggggcacgctctgccagaacaacctcagctacggcc
tcggctacgcacggaactgccgctgcgcccgtcacagtgccaaccactcaaggccgggcg
ggggtggtgcctaatgggtaccacttcacccttgggcttaactctgcatctgggagcaga
ggaacagggagtctcagggagagggatgaagaggactggtgctaa
DBGET
integrated database retrieval system
