Scomber scombrus (Atlantic mackerel): 133995308
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Entry
133995308 CDS
T10651
Symbol
prpf4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133995308 (prpf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ssco03041
]
133995308 (prpf4)
Spliceosome [BR:
ssco03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
133995308 (prpf4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40_Prp19
WD40
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
WD40_Gbeta
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_WDR36-Utp21_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_WDR36-Utp21_1st
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_EML
WD40_MABP1-WDR62_1st
Beta-prop_Aladin
NBCH_WD40
PRP4
WDR90_beta-prop_4th
Beta-prop_IFT122_1st
Beta-prop_DCAF4
Beta-prop_TEP1_C
Beta-prop_SCAP
Beta-prop_EIPR1
Beta-prop_WDR41
Beta-prop_RIG_2nd
Beta-prop_Vps41
Beta-prop_IFT140_1st
WD_LRWD1
Ge1_WD40
Beta-prop_WDR11_1st
WD40_like
Tricorn_2nd
Beta-prop_WDR35_TULP_N
Motif
Other DBs
NCBI-GeneID:
133995308
NCBI-ProteinID:
XP_062290633
LinkDB
All DBs
Position
15:complement(127562..148553)
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AA seq
509 aa
AA seq
DB search
MSDEEEMAAPAAKTRRVYYGSLEEKERERLNATKATTAGNDAVKAGIEAGNINISSGETL
EMEERVSERQQDALAEFERRRRARQITVSTDDAEVKAGLRALGEPITLFGEGPADRRERL
RIVLSVVGPDALKKSRKEEEKAKRSQEECQQTWYHEGSASLKDARLWLAKYSLPRAMRRL
EAARAQKDVTEATRTIRQQEVHKSLRNLNNFCSQIGDDRPISFCHFSPDSKMLVTASWSG
LCKLWSVPDCNLIRSLRGHNTNVGAVVFRPQAGVSLDQSDVNLASCAADGSVKLWTLDSD
EPVADIEGHSERVSRVSWHPSGRFLGTTCYDNSWRLWDLEVQEEILHQEGHSKGVHDLDF
HPDGSMAATGGLDAFGRVWDLRTGRCVMFLEGHLKEIYSLHFSPNGYHLATGSGDNTCKV
WELRNRKCLYTVPAHQNLLSAVRFQPTDGHFLLTGAYDNTAKVWSHPGWTPLKTLAGHEG
KVMGVDVSPDGKLIATCSYDRTFKLWLSE
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacgaggaagagatggcggctccggcggcgaagactcgtcgtgtttactacggc
agcctggaggagaaggagcgggaacgcctcaacgctaccaaggcaaccacggcaggaaat
gatgcggtgaaggccggcatcgaggcgggaaacatcaacatctcctcaggtgagaccctg
gagatggaggagcgtgtgagcgagcggcagcaggacgcactcgctgagttcgagcggcgg
cggcgagcgcggcagatcaccgtctccacggacgacgctgaggtgaaggccggcctccga
gcgctcggagagccaatcacgttgttcggggaggggccagctgaccgccgggagagactg
cgcatcgtgctctctgtagtcggtccagacgctctgaagaagtccaggaaagaagaagag
aaagccaagaggtcccaggaggagtgtcagcagacgtggtaccacgaaggctccgcctcc
ctgaaagatgctcggctctggttggccaaatactctctgcccagggcgatgaggcgtctg
gaggctgcacgcgctcagaaggacgttaccgaggcaacgaggacgatccgccaacaggaa
gtgcacaagagcctcagaaatctgaataacttctgcagtcagattggagacgatcgacca
atcagcttctgccacttcagccccgactctaagatgctcgtcacggcttcctggagcggt
ttgtgtaagctgtggtccgtccccgactgcaacctgattcgttccctgagaggacacaac
accaacgtgggcgccgtcgtcttccgtcctcaggcaggagtctctctcgaccaatcagac
gtcaacctggcctcgtgtgccgcagacgggtccgtgaagctgtggacactggacagcgat
gagccggtggcagacatcgagggtcacagtgagcgagtgtctcgagtatcgtggcatccg
tctggaagattcctgggaaccacatgttatgataattcgtggcgtttgtgggatctggag
gttcaggaggagattcttcatcaggaaggtcacagtaaaggagttcatgatctggacttc
catccagacgggtccatggctgctaccggagggctggatgcgtttgggcgagtctgggac
cttcggacgggacgctgcgtcatgtttctggaaggacacctgaaggagatctacagcctt
cacttctctcccaacgggtatcacctggccacaggaagtggagacaacacgtgtaaggtg
tgggagctgaggaacaggaagtgtctgtacacagtccccgcccaccagaacctgctgtca
gctgtccgcttccaacccacagacgggcacttcctgttgacgggagcgtacgataacaca
gcgaaagtttggagccatccgggctggacgccgctgaaaacgctcgctgggcacgagggg
aaggtgatgggcgtcgacgtgtcacctgacgggaaactgatcgctacgtgttcatacgac
cgcaccttcaaactgtggctgtcagagtga
DBGET
integrated database retrieval system
