Scomber scombrus (Atlantic mackerel): 133995951
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Entry
133995951 CDS
T10651
Name
(RefSeq) collagen alpha-1(IX) chain-like
KO
K08131
collagen type IX alpha
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04510
Focal adhesion
ssco04512
ECM-receptor interaction
ssco04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
133995951
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
133995951
09142 Cell motility
04820 Cytoskeleton in muscle cells
133995951
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ssco00535
]
133995951
Proteoglycans [BR:
ssco00535
]
Extracellular matrix (ECM) proteoglycans
Others
133995951
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Laminin_G_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
133995951
NCBI-ProteinID:
XP_062291445
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All DBs
Position
16:23591102..23616111
Genome browser
AA seq
949 aa
AA seq
DB search
MAFHCSDLTRKQPRHLSMSAFSPVCMALLSLLLAPALGQLDLNRLDGDTVCPPMRSGQDD
LPGFDLITQFQLDVIPLKGVRKVDGSTPHQVAYRLDKEANFQIPTMLNFPRGFPDGYSFM
ATFRMIKNTVSKVWNVWQVVDEYGYKQAGLRLNGDEQALEYFLMGADGNLQTVTFPGLSV
LFNTKWHKVMIGVERDQVTLYVDCQPVDQKPIKGKGPINTEGDTLIGRLDADPDASVVFE
LQWMLIHCDPKRAQRESCNELPATEMYANAEPDRSVQGPPGTPGPEGPRGSPGENGRDGR
DGLPGSSGSPGSTGSKGEQGEIGLPGQRGLPGLPGSAGSSGPMGPRGSVGERGLPGFPGP
QGPAGPASEGPAGPPGKPGTPGDEGNIGPEGQPGPRGGAGTPGIPGPPGPPGPVGPPGAS
NEGSGEACPAACPAGPRGMSGLPGMKGHKGTAGENGKDGEPGAKGETGPLGAQGPPGRMG
DDGQRGPIGFPGSTGEKGDRGLPGFNGVPGPTGPPGAPGVEGIRGRQGLEGLKGDDGAVG
PQGEQGPTGEKGDVGEAGADGLDGLPGVDGAKGEAGTPGAGGIRGIVGIPGLPGKQGVVG
PPGAKGDDGAEGPTGPVGLPGKNGEPGPAGEDGKTGAKGSTGETGKQGPVGPAGPQGIQG
DHGDKGDKGATGIKGHTGHKGDQGPMGPMGPKGSMGDTGLTGDPGVKGDQGPPGITGLKG
EAGAKGQRGATGDEGRPGQTGHEGLAGPMGVRGLEGEAGLPGTPGPRGLPGPAVSNEKLR
EMCSFIVEEQLAEFKKELLTKPAAIGAPGTPGLVGPPGPAGPPGAAGQAGAPGPMGIKGH
PGYFGLPGAPGKKGDTGGKGDKGNKGEDGVGIKGSTGAPGAPGAPGAPGIGKDGKDGKNG
ESGTPGAPGASGPRGPSGPPGLCDPSTCISRLPPLYMLSGKKSASYKNP
NT seq
2850 nt
NT seq
+upstream
nt +downstream
nt
atggccttccactgctctgatttgacgaggaaacaaccacggcatctatcgatgtcggcg
ttctcccccgtctgtatggctctgctgtccctcctcctcgctccagcacttggacaactg
gacctgaaccgcttggatggcgataccgtctgcccacctatgagaagcggacaagatgac
cttccaggttttgatctgatcacacagttccagctggatgtgatccctctgaaaggtgtg
aggaaggtagacggctccactccccaccaggtggcctaccgcctcgacaaggaggccaac
ttccaaattccaaccatgctgaactttccccgtggtttccctgatgggtactccttcatg
gcgaccttccgcatgataaagaacacagtgagcaaggtgtggaatgtctggcaagtagtc
gatgaatatggctacaaacaagccggactcaggctgaacggcgacgagcaggctctggaa
tacttcctgatgggcgccgatggcaacctgcagaccgtgaccttccctggcctttctgtg
ctcttcaacaccaagtggcacaaggtgatgatcggcgtggagcgcgaccaggtcaccctg
tacgtggactgccaaccggtggatcagaaacccatcaagggcaaaggccccatcaacaca
gagggagatactcttattggcaggctggatgctgatccagacgcctccgtagtgtttgag
ctccagtggatgttgattcactgcgacccaaagagagcccagagagagagctgcaatgag
ctgcctgccaccgagatgtatgccaatgctgagcctgacagatcagtccaaggtcccccc
ggaacccctggcccagagggcccccgtgggtccccaggagaaaacggcagagatggaaga
gatggtcttccggggtcttctggcagcccaggctctactggcagcaaaggggagcaggga
gagattggtcttcctggacagagaggattgcctggccttccaggatctgctggttcttct
gggccaatgggtcccagagggtctgtgggagagagaggacttcctggttttcctgggccc
caaggtccagctggcccagcaagtgaaggacctgctggaccaccagggaaaccaggaacc
ccaggagatgaaggaaatattgggcctgagggtcaacctggtcccagagggggagccggc
accccaggaattcctggccctcctggtccaccagggccagtgggaccgcctggtgccagc
aatgagggaagtggggaagcttgtcctgctgcctgccctgctgggcctcgggggatgagt
gggctaccagggatgaagggacacaaaggtacagccggtgagaatggaaaagatggagag
cctggagcgaagggagagactggaccactaggtgcccagggtccaccaggtcgcatggga
gatgatgggcaaagagggccaatcggattccctggatccacaggagagaaaggagacaga
ggtcttcctggtttcaatggcgtccctggacccaccggcccacctggagctcctggtgtg
gagggaatccgtggacgacagggtttggaaggtcttaagggtgatgatggagcagtgggg
cctcaaggagagcagggacctacaggtgaaaaaggagatgttggagaggctggtgcggat
ggcttggatgggcttcctggagttgatggcgccaagggagaggctggtactcctggagct
ggtggtatcaggggaattgtcggtattccagggctgccaggcaagcaaggagtagttgga
ccccctggtgcaaagggtgacgatggtgctgaaggacccactgggcctgttggacttcct
ggaaaaaatggtgagcctggacctgccggagaagatggcaaaacaggagctaaaggatca
acaggtgaaacaggaaaacaagggccagtggggcctgcaggtccccaaggcatccaaggt
gaccatggagataaaggtgacaaaggtgctacaggaataaagggtcatactggacacaaa
ggtgaccagggacctatgggaccaatgggaccaaaaggaagcatgggggacacaggtttg
acaggagatcccggtgtcaaaggagaccagggccctcctggtattactggactaaaagga
gaggctggagcgaagggccaaagaggagcgacaggagatgaaggcagaccaggccagaca
ggccacgagggtttggctggtccaatgggagttcgagggctggagggagaagcaggcctt
cctggaacaccaggccccagaggtctgcctggtccagcagtgagtaatgagaagcttcgg
gaaatgtgctcattcatcgttgaagaacaattagcagagtttaagaaagagcttcttacg
aagccagcagccattggtgcccctggtacacctggacttgtaggacctcccggccccgct
ggaccacctggagcagcaggacaagcaggagctccagggccaatgggtatcaaaggccat
ccaggctactttggacttccaggtgcaccaggcaaaaaaggtgatacaggaggaaaagga
gataagggaaacaagggagaggatggtgttggaatcaaaggaagcacaggtgcaccaggt
gcaccaggtgctccaggtgctcccggcattggaaaggatggcaaagacggaaagaatggt
gagtcaggaactcccggtgccccaggagcatccggtccaaggggtccctcagggccaccc
ggactttgcgacccatcaacctgcataagccgacttccacctctctacatgctcagtgga
aagaagtcagccagctacaaaaacccatga
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