Scomber scombrus (Atlantic mackerel): 133995999
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Entry
133995999 CDS
T10651
Name
(RefSeq) tenascin isoform X1
KO
K06252
tenascin
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04510
Focal adhesion
ssco04512
ECM-receptor interaction
ssco04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
133995999
04518 Integrin signaling
133995999
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
133995999
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ssco00536
]
133995999
Glycosaminoglycan binding proteins [BR:
ssco00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
133995999
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_TEN
Fibrinogen_C
EGF_Teneurin
fn3
EGF_2
EGF_Tenascin
hEGF
Fn3_Dep-1_3rd
FN3_Tor_3rd
FN3_DSCAM-DSCAML_C
EGF
DUF7949
EGF_PEAR1L
Fn3_Dep-1_2nd
EGF_integrin
Ig_J
Motif
Other DBs
NCBI-GeneID:
133995999
NCBI-ProteinID:
XP_062291500
LinkDB
All DBs
Position
16:complement(3275014..3332458)
Genome browser
AA seq
2110 aa
AA seq
DB search
MLPTFPSPLLLLLLLLAGPALMTSSASQELEVRGHRTPRDTKQDTIKVVISEGCTHGDSS
DGSQGGKEIDLVPGAPLVLTHKIKLVPSGFGSGSGSCGCEADFAALRERLERLEREVSAL
REKCGGPEGGCCTSKESKGAGCSMKPKMDECPNECSDQGRCVDGKCVCFPGFSGPDCSDS
NCPGNCNDKGRCVNGQCVCDPGFSGPDCSQRGCPDNCNNRGRCVNGKCVCDSGFTGPSCS
DESCPGNCNNKGRCVNGQCVCNPGFTGPDCSKKACPDNCNNRGRCVNGKCVCDSGYTGAD
CSEISCPGNCNNRGRCVNGQCVCNDGFTGLDCSERTCPNNCNDRGRCVNGKCVCDSSFTG
DDCSENSCPGNCNNKGRCVNGQCVCNDGFTGHDCSEKACPNNCSNRGKCVNGKCVCDVGF
AGPDCAAKGCPSNCNNKGRCVKGKCVCRRGFTGPDCSQCEEGMTGPNCDTAMSGVPQLNT
REITSTSVTLIWTPPPVQYDIYHITFTSQKESDQKITVQVEGSLTTFTQTGLAAGQEYIV
SITGEIGGRRGAESSTEFTTLISGPTNLHVVKTTSTSAVVQWEQSQGEIDRYRMTVSPKD
GVGKSQEMTFPPGRDSAHIQQLEAGRLYDITLVAEKGRSQSEPTSTQAVPGKTLPKVTMA
AATTQVTPAPGQEDGDRDQELNTSSENQDFDQKRRKEDGTDSVKDGGVIGLNRDHSATVI
ARTKPLVSRKDGAKPVLAERPALSGKPNVPNFLRFNASRVGPGGRKVGPGTNPLQGERKK
LFLAKRPRLLGPTVRDRTPEDTALTVRDPSVDASSTERREDKNSAIMSGTDSGTNSEEPT
VAPGTQKQPDVGTEVQRGDADPVSSEPTGAGQSHEKKCMNKIKVTHIRLPLKDRSSGCRG
DGTVLEGKTTSDPHQGSSETDDTPLENHFDLTPLSPETDPNYSPDPLHKILTDTFESLNI
TTFSVHLSKPADLSDDAAKVRNHILGGLRPLSPSSLSQSASSTSQSSSLPSSSSSSSSSE
ESTSLTSSLTSTAAPSLTYLILSSASLLPSSPSSLPSLSPSPSSLSSSSLEKSDPGESNE
ADIATDESTPSLASPEDRKVPPRESGIPVFRRTHPKRRPHQNMVHFLNRTRLNLKAPYHS
GSPLNLIPTRATETMHTPASELSLSPSSSAPEESSSVEVNAPVSDTSADKDEATTLTSSG
AEQNQKKTPTKGGRLPIRRLPSKLGNRRRPNGPFQNQTRPNLRVQTRPTQPLNHAMESGT
DPISPNESPAPSSPPSSTKEKSYVGPFQNRNRTYLRPPHISPIPKPLPTRKPNGNVGIRG
GQTIQSAKENTPEVPVDPSGEQGDSRPTQEVKIRQSDPVGDNDLTQTIKSGEEETQTPES
NSDSGIHKERVNAAKNTGTAIQGRPVIKQKITLPKRQPPTRRITAHSTPMRNIGGSHRVG
DPKANHTAKHEFDSKTEQTGSDSSKSPKESDVSSSGVKREPLDYVGVTNQTSDGFTVIWD
APEGKYKNFVVTKKESGKDEEPKEEESRKELEEEDSEKEDGKEDAENRNTENENRVLESV
GTQIPTIQSIKEVKPATESDKIVLPGSARSFQFEDLPPQKEYTVTLLGKGPGLLSRLHKL
VISTGPEPPTDITFSKVTETSLTVSWTKPNTPVSGFKITYTHTEEGEPVSVSVDSNNSSL
GLSELSPGSSYEVNVISILGLDESDPIRESVRTRPDAPTDLKAINVTDTKALLLWRPALA
AIDKYTIVYSSGKDSPLTITVSGNAAEQQLSGLEGSTTYTVTITSELGSQKSSAATTSFT
TDSGSGKLRDLMASQVTPRTAVLTWKPPSKLLGSYKLTYQTEGGEMKEVIVDASVREYKL
TKLHPGSKYNVQLQMEGGGGSISTDFTTGTLRFPFPTDCSQELLNGITTSGEVEIFPHGK
LGAPMMVYCDMETDGGGWTVLQRRKDGSVDFFKGWKEYVKGFGDLSGEFWLGLDSLHNLT
TMTKMNLRVDMRDGDESVYAKYSTFEVAKRNYRLTVGGYSGTAGDSFSYHNNRVFSTKDR
DPAPFITRCAMSYRGGWWYKNCHEANLNGLYGIDVKHQGVIWTSWKGKEFSIPFTEMKMR
PAAFSPPTRG
NT seq
6333 nt
NT seq
+upstream
nt +downstream
nt
atgcttcccaccttcccctcccccctcctcctcctcctcctcctcctggctggtcctgcc
ctcatgacttcatcagcctcccaggagttagaggtcaggggtcacaggacaccaagggat
accaagcaggatacaatcaaggtcgtgatctctgagggttgcactcatggtgattcatct
gatgggagccaaggaggtaaagagattgatctggtccctggtgctcctctggtcctgacc
cataagatcaaattggttccgtcgggttttgggtctggttctggatcgtgtggctgcgag
gcggactttgctgccctgcgggagcgtctggagaggctggagagggaggtgtcggctctc
agggagaaatgcggaggacctgaaggaggctgctgcacctccaaggagagcaaaggtgct
ggatgctccatgaaaccaaaaatggacgaatgtcccaatgagtgcagtgatcagggtcgc
tgcgtggatggcaagtgcgtttgcttccctggtttcagcgggccggactgcagcgactcc
aactgtccaggaaactgcaacgacaaaggaaggtgtgtgaacggacagtgtgtgtgcgat
cctggcttcagcggtcccgactgctcgcagagaggttgccccgacaactgcaacaaccga
ggcagatgtgtaaacggtaaatgcgtatgcgatagcggtttcacaggacccagctgctca
gatgaatcctgtcctggaaattgcaacaacaaggggcgctgcgtcaacggacagtgtgtg
tgcaatcctggattcactggtccggactgctcaaagaaagcctgccctgacaactgcaac
aatcgtggaaggtgtgtgaacggtaaatgtgtgtgcgacagcggctacactggtgctgac
tgctctgagatctcttgcccaggtaactgcaacaacagggggcgctgcgttaacggacag
tgtgtttgtaatgatggattcaccggtttggactgctccgaaagaacgtgccctaataac
tgcaacgatcgcggcaggtgtgtgaatggtaaatgtgtgtgtgacagtagcttcactggc
gatgactgctctgagaactcctgcccaggtaactgcaacaacaaagggcgttgcgttaac
ggacagtgcgtctgcaatgatggcttcactggccacgactgctctgaaaaagcttgtccc
aacaactgcagcaaccgtgggaagtgtgtaaacgggaagtgtgtttgcgatgtgggcttt
gccggaccagactgcgccgccaaaggttgtcccagtaactgcaacaacaaaggacggtgt
gtcaaaggaaagtgtgtctgccggcgtggcttcactggaccggactgcagccagtgtgag
gaggggatgacaggacccaactgtgatactgccatgtcaggtgttccccagctgaacacc
agagagatcacatccacatccgtcactctgatctggactccacctcctgtccagtatgac
atctaccacatcacctttaccagtcagaaagagagtgaccagaagataacggtgcaggtg
gagggcagcttgaccaccttcacccagacgggcctggcagctggtcaggaatacatcgtc
agcatcaccggagagattggcggcagaaggggagccgagagctcgaccgaattcacgacc
ttaatctctggtcccacaaatctccacgtcgtcaagacgacctccacgtctgcggtggtc
caatgggagcagtcgcagggtgagattgacaggtaccgtatgactgtgtcgcccaaagac
ggagtagggaagagtcaggaaatgaccttccctcctggcagagactctgcccacatccag
cagctggaggcggggcgtctgtatgacatcacacttgtggcagaaaaaggcagaagtcag
agtgaacctacgtccactcaggcagttcctgggaaaacattaccaaaggttaccatggca
gctgcgaccacgcaggtcacaccagcaccaggacaagaagatggcgatagagaccaagag
ttgaacacttcttctgaaaatcaagactttgaccaaaagaggaggaaggaggatgggact
gactctgtaaaagacgggggtgtcattggtcttaacagagaccactcagccactgtgatt
gccagaactaaacctctggtcagcagaaaagatggcgccaagcccgtacttgctgaaagg
cctgcattgtccggtaagccaaatgtcccaaactttttgcgtttcaatgcaagcagagtg
ggacctggaggtagaaaggttggccctggcacaaaccccctgcaaggagagaggaagaag
ctctttttagccaaaagacctagactgcttggtcccactgtaagagacaggacaccagag
gatacagctttgactgtgagagaccctagtgtagatgcatcgagtactgagaggagggaa
gacaaaaattcagctataatgtctggaaccgattcaggaaccaactcggaggaaccaact
gttgctcctggcacacaaaagcaaccagatgttggcacagaagtccagagaggtgatgct
gatccagtgtcttcagagccaactggggctggtcaaagccatgagaagaaatgtatgaat
aaaattaaagtgacacatatcagattaccccttaaggacaggagcagtggatgtagaggg
gatggaacagtgctggaaggaaaaactacgtcagacccacatcagggctcttctgaaaca
gatgatacaccactggaaaatcattttgatttgacgccattgtccccagagactgatccc
aattattcacctgatcctttacataaaatcctcacagacacttttgaaagtttgaatatc
acaacattttctgttcacctgtccaaacctgcagacctttctgatgatgcagcaaaagtg
aggaaccatattttaggaggactgagaccactgtcaccatcctcattatctcagtcagcc
tcatcaacctcacaatcatcatccctgccatcatcttcatcatcatcatcttcatctgaa
gaatcaacgtcactcacttcatctttaacatcaacagcagcaccatcattaacatattta
atcttgtcatctgcctcattattaccatcatcaccatcatcactaccatcattatctcca
tcaccttcatcattgtcctcttctagtttagaaaaatctgatccaggggaaagcaatgaa
gcagatatagctactgacgaaagtacccctagcttggcatcaccagaagatcgaaaagta
ccccccagagaaagtggcatacctgttttccgtcgcacacatccaaaacgtcgcccacac
caaaacatggtacactttctaaaccgaacccgacttaatttgaaagctccttaccattct
ggttcacctctgaacctcatccctacaagagcgacagaaacaatgcatacccctgcaagt
gagttatcattgtcaccatcttcatctgctccagaggaatcatcttctgttgaagtaaat
gcaccagttagtgatacaagtgcagacaaagatgaagcaactacccttacatcctcagga
gctgaacaaaaccagaaaaaaacgccaacaaaaggaggaagactcccgattcgtcgtctt
ccttcaaaattgggaaaccggcgtcgcccaaatggaccttttcagaaccaaactcgccca
aacttgagagtccagactcgccctactcaacctttaaatcatgcaatggaaagtggtaca
gaccctatttctcctaatgaatcaccagccccctcatcacctccttccagtactaaagaa
aaatcttatgttgggcctttccaaaacagaaaccgtacatacctgagaccacctcatata
agtcccattcctaagcctttaccaacgagaaagccaaatggaaacgttggcattagggga
ggtcaaactatccagtcagcaaaggagaatacccctgaagtcccagttgacccatctgga
gagcagggtgacagcagacctacccaagaagtcaaaattagacaatcagaccctgtaggg
gacaatgatctgactcaaactatcaaatctggggaagaagaaacccagaccccagaatct
aactctgactctggcattcataaagagcgagtcaatgctgccaaaaatactggcactgca
attcaaggtagaccagttatcaagcaaaaaatcacacttccaaagagacaaccaccaact
agaagaataacagcacacagcacgccgatgagaaatattggtgggagccatagggtaggg
gatccaaaagcaaatcatactgcaaaacatgagtttgacagtaaaactgaacagacagga
agcgatagttccaaatctccaaaggaatcagatgtctcttcttctggagtcaaaagggaa
cctctggactacgtgggagtgacgaaccaaacctcagatggatttacagttatatgggat
gcacctgaggggaaatataaaaactttgtggtgaccaagaaagaatctggaaaagatgaa
gagccaaaggaggaggaaagcaggaaagaactggaagaagaagactctgagaaagaagat
ggcaaagaagatgctgaaaatagaaacactgaaaatgaaaacagagtacttgaaagtgtg
ggcacacagataccaaccatccaaagcatcaaagaagtcaaacctgccacagaaagtgac
aagattgttcttcctggttcagcacgctccttccagtttgaggatctgcctccgcagaaa
gagtacactgtgaccttgcttggaaagggccctggccttctgtccagactgcacaagctt
gtcatcagtacaggcccggagcctccgaccgacataaccttcagtaaagttacagaaaca
tctctgacggtgtcctggaccaaacccaatacacccgtcagtggtttcaagatcacatac
acacacactgaggaaggtgagccggtgtcagtgtccgtggactcgaacaattcttctctc
ggcctatcagagctctctcctggctcctcatacgaggtcaatgtgatctccatccttgga
ttggacgagagcgaccccatcagggaatctgtcaggacacgacctgacgctcctacagac
ctgaaggccataaacgtcacagacaccaaggccttgttgttatggcgtccagctttggcc
gccattgataaatacaccattgtttacagctcagggaaagattcaccgttgacgatcaca
gtgtctggaaacgcagcggagcagcagctgagcggtttggaaggatccaccacctacacc
gtcaccataaccagcgagttgggcagccagaagagctcagcagccaccaccagcttcacc
accgacagcggctctggaaaactacgtgacctcatggccagccaggtaacccctcgcacc
gccgtgttgacatggaaaccaccctcaaagcttttggggagctacaagctgacctatcag
acagaaggtggagaaatgaaggaagtgatcgtggatgcctcagtaagagagtacaagctg
actaagcttcatcctggatccaagtacaatgtacagctgcagatggagggaggaggaggc
tccatctccactgacttcaccactggtaccttacggttccccttccccaccgactgctcc
caggagctgctgaacggcatcacgacatcaggcgaggtcgagattttcccacacgggaaa
ctcggggcaccgatgatggtttactgcgacatggagacagacggaggaggctggacggtc
ctccagaggaggaaggatggctcggtggatttctttaaaggttggaaggagtacgtcaaa
ggattcggagatctgagtggagagttctggttgggtcttgacagtctccacaacctgaca
acgatgaccaagatgaatctgcgtgtcgacatgcgtgatggagatgagtcggtgtacgcc
aaatactcgacatttgaggttgccaagaggaactacagactgacggtgggcggatacagc
ggcactgcaggcgactccttcagttaccacaacaatcgagtcttctccaccaaggaccgc
gacccagcaccgttcatcacccgctgtgccatgtcgtaccgcggcggctggtggtacaag
aactgccacgaggcaaacctcaacggcctgtacggcatcgatgtcaaacaccagggtgtg
atctggaccagctggaaaggaaaagagttctccatcccgttcactgagatgaagatgaga
ccagcagccttcagtcctccgaccagaggatga
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integrated database retrieval system
