Scomber scombrus (Atlantic mackerel): 133996029
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Entry
133996029 CDS
T10651
Name
(RefSeq) semaphorin-6D-like
KO
K06842
semaphorin 6
Organism
ssco Scomber scombrus (Atlantic mackerel)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Sema
PSI
Motif
Other DBs
NCBI-GeneID:
133996029
NCBI-ProteinID:
XP_062291546
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Position
16:complement(290589..316524)
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AA seq
1146 aa
AA seq
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MAPTDWLSPWRPPLALLLLASCFLSESASTSPFPKDLEPISTVSWEHSYQFPGFQGLLQD
NDTLRLGLDFQRMLRINHMLYIAARDHVFAVNLTTASERFVPQLKLTWKSRDVSKCTVRG
KNSDECYNYVKVLVPRNDETLFTCGTNAFNPTCRNYKMTSLEPVGEEVVGQARCPFESVQ
SNVGLFAGGDFYSATMTDFLASDAVIYRSLGDDRPVLRTVKYDSKWLREPHFLHAIDYGN
YVYFFLREIAVENTALGKVVFSRVARVCKNDNGGSPRVLERYWTSFLKARLNCSVPGDSF
FYFDVLQSLTNVLQINQRPAVVGVFTTQSNSIPGSAVCAFYMDDIEKVFNGKFKEQRTGD
SSWTPVPDEHVPRPRPGTCAGDGPAAEYKSSVQFPDETLTFIKSYPLMDEAVPSVNHRPC
FTRTASRSKLTQIVVDVSAGPSKDRTVMFLGSDDGRVLKVLASTDPDYSSGSRLLEDIDV
YNPTKCNVQGQEDRRVLGLELDKDHHALFVAFSSCVIRVQLSRCTRHGACKQACLASRDP
YCIWLRTGSCANMAPGFKAGFEQDIDGNQSFHPDSCHADVSETSRNQESAADSAYGVRHL
PELDQRSAANVHYTLLIACVLVAFLLGAFLSGFLVSCYCSRSAAQRERRLNKDPEASLPH
ALSLRSLAKLNGLLDGQPKEDKLDVSTPQMYSSFIPNGLAELQSPGPPGPALGDLSLSQS
LSQADGELSGLPTPDSTPELPIKNMKALQQHQYEKNQNCNNGKDNHPKPAASCSGSGLGF
VAVVGNSVTRQLFPFTHHHGNSLSNGLAHGAGASSSSLHLLEERKISSDERSSGGGGVPH
HHHSQQSLPQSVVDVSALDELLKHIHEVSASGTGGIKVLTSSSSSSVFPGPSSSSGGHHH
GHHHTHHHHGQTRTHHYNHSHHHSNHHSSSSGGGSSGGGGGGHHHQQQIPETESSPYYST
STLPRDGLPKRLDAPAQTSSSSSASSSSSSSNNPTSSTSIPSSSSSSSSTPLQQQVIPER
PGQSAVSVTRHHSQRQSLIKMGSSGGAVPRHHSFNQRGAPHAHFLARMNTNSSSNGPPAA
SSSESRRPLTGSSCLTRQHSYSEGPHAQRAAIVRRTASLKPQVPPKPLFLPNSATSPVAE
QGKYKY
NT seq
3441 nt
NT seq
+upstream
nt +downstream
nt
atggccccgaccgattggttgtcaccatggcgaccgccgctggcgctgctcctgctggct
tcctgtttcctgtccgagtccgcctcgacctcgccgttccccaaagacctcgaaccgatc
agcaccgtcagctgggaacactcgtatcagtttccagggtttcagggtctgctgcaggat
aacgacacactgagactcggtctggactttcagagaatgttacgcatcaaccacatgctg
tacatcgcagccagggatcacgtgttcgctgtcaacctgacgacggcttcagagcggttc
gtccctcagctgaagctgacgtggaaatcaagagacgtcagcaagtgtacggtccgaggg
aagaacagcgacgaatgttacaactacgtcaaagttctggttccccgaaacgacgagacg
ttgttcacctgcggcaccaacgccttcaaccccacctgcaggaactacaagatgacgagt
ctggagccggtgggagaggaagtagtcggtcaggctcgatgtcccttcgagtccgttcag
tccaacgttggactgtttgctggaggagatttctactcggccacgatgaccgacttcctg
gccagcgacgctgtgatctaccggagcctgggagacgaccggcccgtcctcaggaccgtc
aaatacgactccaagtggctccgagagccgcacttcctgcacgccatcgactacggaaac
tacgtctacttcttcctgcgtgagatcgctgtggagaacacggctctggggaaggtggtg
ttttctcgggtcgctcgtgtctgtaagaacgataacggcggctctcccagagttctggag
agatactggacttcatttctaaaggctcgtctgaattgttcggttcctggagattcgttc
ttctacttcgacgttcttcagtctctcaccaacgttctgcagatcaaccagagaccagct
gtggtcggagtctttaccacccagtccaacagcatccctggctctgcagtctgtgccttc
tacatggacgacatcgagaaagtctttaacgggaagtttaaggagcagcggaccggcgac
tcgtcctggactccggttcctgacgagcatgtcccgcgtcctcgaccagggacgtgtgca
ggagacggtccggctgcagaatacaagtcatcggttcagtttccagatgagacgctgacg
tttattaagtcctatccactgatggacgaagctgtcccctccgtcaaccaccggccctgc
ttcaccaggaccgccagcaggtccaagctgacccagatcgtggtggacgtctcggccgga
ccctccaaagaccggaccgtcatgtttctgggctcggacgacggcagggtcctgaaggtt
ctggccagcacggatccggactacagctctggatccagactgctggaagacattgacgtc
tacaaccccaccaagtgtaacgttcagggccaggaggacaggagagttctgggtctggag
ctggataaagaccatcacgctctgtttgtggccttcagcagctgcgtgatccgagtccag
ctgagccgctgcacccgacacggagcctgcaaacaagcttgtctggcctctcgtgaccca
tactgcatctggctgcggacaggaagttgtgccaacatggcgcctggtttcaaagccggg
tttgaacaggacatcgatggcaaccaatcgtttcaccctgacagctgccacgctgacgtg
tcggagacctcgaggaaccaggagtctgcagccgactccgcctacggcgttcggcatctg
ccggagctggatcagcgctccgccgctaacgtccactacacgctgctgatcgcctgcgtg
ctggtggcgttcctcctgggcgccttcctgtccggcttcctggtgtcgtgttactgcagc
cgcagtgccgctcagcgggagagaaggctgaacaaagaccctgaagcctcgctgcctcac
gcactgtccctcagatcactggccaagctcaacggactgctggacggacagccgaaggag
gacaaactggacgtctccacccctcagatgtacagctccttcataccaaacggcctggcg
gagctccaaagccccggacccccgggcccagcgctgggggacctcagcctgtcccagtct
ctgtctcaggcggacggcgagctgtccggtctgccgacgccggattccacaccggagctg
cccatcaagaacatgaaggctctgcagcagcatcagtacgagaagaaccagaactgcaac
aacggcaaagacaaccacccgaaacctgctgccagctgctctgggtccggtctgggcttc
gtggccgtcgtcggcaactccgtgacccggcagctgttccccttcactcatcaccatggc
aacagtctgagcaacggactggcccacggagcgggcgcgtcttcgtcctcactgcacctc
ctcgaggagaggaagatctccagtgatgagcggtcatcaggaggaggaggagtcccccat
catcaccactcccagcagtcgctccctcagtcggtggttgacgtgtcggcgctggacgag
ctgctcaaacacatccacgaggtcagcgcgtcgggaaccggaggcatcaaggtcctgacc
tcctcctcctcctcctccgtgttccccgggccgtcctcgtcctctggaggacatcatcat
ggtcaccatcacacccatcatcaccatggacagacccgcacccaccactacaaccacagc
catcaccatagcaaccaccacagcagcagcagcggcggcggcagcagtggcggcggcggt
ggcggtcaccatcaccagcagcagatccctgagacagaatcgtctccgtactacagcacc
tccacgctgccgcgggacggcctccccaaacgcctcgacgcacctgctcaaacctccagc
tcctcctccgcctcctcctcttcgtcctcctccaacaaccccacctcctccacctccatc
ccctcttcctcctcctcctcttcctccactccgctccagcagcaagtgattccagagcgg
cccggtcagagcgccgtctccgtgactcgccaccattcccaacgccaatccctcatcaag
atgggcagcagtggcggcgccgtgccgcgtcaccacagcttcaaccagcggggggcgcca
cacgcacacttcctcgccaggatgaacaccaacagcagcagcaacgggccgccggccgcc
agcagcagcgagagccggcggccgctgaccggcagcagctgcctgacgcggcagcacagt
tacagcgaaggaccgcacgctcaacgcgccgccatcgtccggcggacggcgtcgctcaaa
cctcaagttcccccaaagccgctgttcctcccgaactcagccacgtcgccggtagcagag
cagggaaagtacaaatactga
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