Scomber scombrus (Atlantic mackerel): 133996063
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Entry
133996063 CDS
T10651
Symbol
thrb
Name
(RefSeq) thyroid hormone receptor beta isoform X1
KO
K08362
thyroid hormone receptor beta
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04080
Neuroactive ligand-receptor interaction
ssco04081
Hormone signaling
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
133996063 (thrb)
04081 Hormone signaling
133996063 (thrb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ssco03000
]
133996063 (thrb)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
ssco03310
]
133996063 (thrb)
Transcription factors [BR:
ssco03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
133996063 (thrb)
Nuclear receptors [BR:
ssco03310
]
1. Thyroid hormone like
1A. Thyroid hormone receptor (THR)
133996063 (thrb)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
CpXC
Motif
Other DBs
NCBI-GeneID:
133996063
NCBI-ProteinID:
XP_062291590
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All DBs
Position
16:complement(25870046..25993949)
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AA seq
415 aa
AA seq
DB search
MSEPAENCSPHWKDEAIQNGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTI
QKNLNPTYACKYEGKCIIDKVTRNQCQECRFKKCIAVGMATDLVLDDSKRLAKRKLIEEN
RERRRKEELQKTAWDRLEPTQEEWDLIRMVTEAHMATNAQGNHWKQKRKFLVEEAMLLNE
ITCNLFYTSDQSAAGVKETKPEDIGQAPMVNTPDGNKVDIEAFSQFTKIITPAITRVVDF
AKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGL
GVVSDAIFDLGVSLSSFNLDDSEVALLQAVILLSSDRPGLSSVERIERCQEEFLMAFEHY
INYRKHKLAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagccagcagaaaattgctccccccactggaaagatgaggccattcaaaatggg
tacataccaagttacctggacaaggatgagctatgtgtagtatgcggggacaaagctaca
ggctatcactatcgctgcattacctgtgaaggttgcaagggtttcttcaggagaaccatc
cagaagaatctcaacccgacctacgcttgtaagtacgaagggaaatgcatcatcgacaaa
gtgaccagaaaccagtgccaggaatgtcgcttcaagaagtgcattgcggtgggaatggcg
accgacttggtgttggacgacagcaagcggctggccaagcggaagctaatcgaggagaac
cgggagcgccgtcggaaggaggaactgcagaagacggcatgggaccgactggagcccacc
caggaggagtgggacctcatccgtatggttactgaggcccatatggccacgaacgcccag
ggcaaccactggaagcagaagcggaaattcctggtcgaggaagctatgcttcttaatgaa
ataacatgtaatttattctatacttctgaccagagtgcagcgggggtgaaggaaactaag
cctgaggatattggtcaagcgcccatggtcaatacaccagatggaaacaaagtggatata
gaagccttcagtcagtttacaaaaattatcacccctgccataacccgagtggtggacttt
gccaaaaaactgcctatgttttgtgagctgccttgtgaagaccagatcatcctgttgaaa
ggctgctgcatggagatcatgtcactgcgagctgccgttcgctacgacccggagagcgag
accctcacgcttaacggggagatggcggtcacacgcggtcagcttaagaacgggggcctg
ggtgtagtgtcggatgccatcttcgaccttggcgtgtcactgtcctcctttaacttggat
gactctgaggtggctcttctacaggctgtcatcctgctttcatctgatcgtccgggcctg
agtagcgtggagcgaatcgaacgctgccaagaggagttcctgatggcctttgaacattac
atcaactaccgcaaacacaaattggcgcatttctggcctaagctgctaatgaaggtgacg
gacctgcggatgattggcgcctgccacgccagccgattccttcacatgaaagtggagtgt
cccactgagctattccctcctctcttcctggaggtcttcgaggactga
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