Scomber scombrus (Atlantic mackerel): 133996074
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Entry
133996074 CDS
T10651
Symbol
ddx39b
Name
(RefSeq) DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03013
Nucleocytoplasmic transport
ssco03015
mRNA surveillance pathway
ssco03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133996074 (ddx39b)
09122 Translation
03013 Nucleocytoplasmic transport
133996074 (ddx39b)
03015 mRNA surveillance pathway
133996074 (ddx39b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssco03019
]
133996074 (ddx39b)
03041 Spliceosome [BR:
ssco03041
]
133996074 (ddx39b)
Enzymes [BR:
ssco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
133996074 (ddx39b)
Messenger RNA biogenesis [BR:
ssco03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
133996074 (ddx39b)
Spliceosome [BR:
ssco03041
]
Complex C
Other components
EJC/TREX
133996074 (ddx39b)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
133996074 (ddx39b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
AAA_19
Motif
Other DBs
NCBI-GeneID:
133996074
NCBI-ProteinID:
XP_062291615
LinkDB
All DBs
Position
16:complement(28441358..28463402)
Genome browser
AA seq
432 aa
AA seq
DB search
MTENDVDNELLDYEDDEVEAAGVGDVGGTGDMSMRKEGVKGSYVSIHSSGFRDFLLKPEL
LRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSV
LVMCHTRELAFQISKEYERFSKYMPTVKVAVFFGGLSIKKDEEVLKKDSPHIVVGTPGRI
LALTRNKTLNLRHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIR
PVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDALEFNQVVIFVKS
VQRCVALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERV
NIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEGDARTLNDVQDRFEVNIDELPD
EIDISSYIEPAR
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atgactgagaacgacgtagacaacgagctgttggactatgaggatgacgaggtggaggct
gcgggggtcggggatgtcgggggcacaggtgacatgtccatgaggaaggaaggagtgaag
ggctcctatgtgtccattcactcttctggattcagagacttcctgctgaaaccagagctg
ctcagagccatagtggactgtgggtttgagcatccgtctgaggttcagcatgaatgcatc
cctcaggccatcctgggtatggatgtgctctgtcaggcaaagtcgggcatgggaaagact
gcagtgtttgttctggctactctgcagcagctggagccagtcacaggacaggtgtcggtg
ttggtaatgtgtcataccagagagctggcctttcagatcagcaaggagtatgagagattc
tccaagtacatgcccactgtcaaggtggcagtgttttttggagggctgtccataaagaaa
gatgaagaggtgctgaagaaggactctcctcacattgtggttggaacaccgggccggatc
ctggcactgacacgcaacaagactctcaacctgcgtcacattaaacatttcatcctggat
gagtgtgacaaaatgctggagcagctcgacatgcgcagagacgtccaggagatcttccgt
atgactccccatgagaagcaggtgatgatgttcagcgccaccctgagcaaagagatccgt
cctgtctgcagaaagttcatgcaagatccgatggaaatctttgttgatgacgaaaccaaa
ctgaccctgcatggtctgcagcagtactacgtcaagctgaaggacaatgagaaaaacaga
aagctctttgaccttctggacgctctggagttcaaccaggtggtgatctttgtgaagtcg
gtgcagcggtgtgtagctctggctcagctgctggtggagcagaacttccctgccatcgcc
atccacagagggatgcctcaggaggaacgtttgtctcgctaccagcagttcaaagacttt
cagaggagaatcctggtggctaccaacctgtttggacgggggatggacatcgagagagtc
aacattgcctttaattatgacatgccagaagactctgacacttacctacacagggtggcc
cgagcaggcaggtttggcacaaagggcctggctatcacctttgtgtctgatgagggcgac
gcccgcacgctcaacgacgtccaggaccgcttcgaggtgaacatcgacgagctgccagac
gagatagacatttcttcttacattgaaccagcacgatag
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