Scomber scombrus (Atlantic mackerel): 133996336
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Entry
133996336 CDS
T10651
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133996336
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssco03019
]
133996336
03036 Chromosome and associated proteins [BR:
ssco03036
]
133996336
Enzymes [BR:
ssco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
133996336
Messenger RNA biogenesis [BR:
ssco03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
133996336
mRNA degradation factors
5'-3' decay
Decapping complex
133996336
Chromosome and associated proteins [BR:
ssco03036
]
Eukaryotic type
Gene silencing
piRNA pathway
133996336
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
133996336
NCBI-ProteinID:
XP_062291871
LinkDB
All DBs
Position
16:complement(10098397..10109873)
Genome browser
AA seq
489 aa
AA seq
DB search
MATARTENVGPVVMGLNKQNGQLRGQTKPASVHPAPTTQGKALGAPQKAGGASQEGGGIK
FGDDWKKSLKLPPKDNRVKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESI
PIALSGRDILARAKNGTGKSGAYLIPLLERIDLKKDHIQAIVMVPTRELALQVSQICIQI
SKHLGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVDRVQMMVMDE
ADKLLSQDFVVLIEDIISFLAKNRQILLYSATFPISVQKFMAKHLQKPYEINLMEELTLK
GITQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIHAK
MMQEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGR
FGHLGLAINLITSEDRFNLKAIEDQLVTDIKPIPSSIDKSLYVAEFHSGSADCDVEEVEE
KSGRQQDST
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atggcaaccgccagaacagaaaacgttggcccggttgtcatgggactgaacaagcagaac
gggcagctcagaggacagaccaaaccagcttcagtccatccagcacccacaactcaagga
aaggctttgggtgcaccccagaaagcaggcggtgcttctcaagaaggaggaggcattaag
tttggagatgactggaaaaagagcctaaagctccctcccaaagacaacagggtcaaaacc
tcagatgtgacgtccactaaggggaatgaatttgaagattactgtctcaaacgagaactc
ctgatgggcatctttgagatgggttgggagaaaccgtctcctatccaggaggagagcatt
cccatcgccctgtctggacgggatattctggcccgggctaaaaatggaacaggaaaaagt
ggagcctatctgatcccactgctagagaggatagacctgaaaaaggaccacatacaggct
attgtcatggtgcccacccgtgagctggcgctgcaggtgagtcagatctgcatccagatc
agcaaacacctgggaggagtcaaagtcatggccaccaccgggggcaccaacctgcgagat
gacatcatgcgtctggacgaaactgtgcatgttgtcatcgccacacctggtaggatcctg
gacttaataaagaaaggagtggcaaaggtggatagagtccagatgatggtgatggatgag
gcagataagctgctgtctcaggattttgtggtgcttattgaggatatcattagcttcctg
gccaagaacaggcagatcctgctctactctgcaaccttccccatcagcgtgcagaagttc
atggccaagcaccttcagaaaccctacgagataaacctgatggaggagctgactctgaag
ggcattactcagtattatgcctacgtcactgagaggcaaaaagtccactgcctcaacaca
ctgttctccaggcttcagatcaaccagtcaatcatcttctgtaactccactcagagggtg
gagctcttggcaaagaagatcacccagctgggttactcctgcttctacatccacgccaag
atgatgcaggaatatagaaaccgtgtgttccacgacttcagaaacggactgtgcaggaac
ctggtctgcaccgatctcttcaccagaggtattgacatccaggccgtcaacgtggtcatc
aacttcgacttccccaagaatgctgagacttacctccatcgtatcggaagatcagggagg
tttggtcacctgggcttggccatcaacctgatcacatcagaggatcgcttcaacctgaag
gccatcgaagaccagctggtgaccgacatcaagccgattcccagcagcatcgacaagagc
ctctacgtcgccgaattccactctggcagcgccgactgtgatgtggaggaggtggaggag
aaatcagggcgtcaacaggacagcacctag
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