Scomber scombrus (Atlantic mackerel): 133996369
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Entry
133996369 CDS
T10651
Symbol
vps50
Name
(RefSeq) syndetin
KO
K23288
syndetin
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ssco04131
]
133996369 (vps50)
Membrane trafficking [BR:
ssco04131
]
Protein recycling
Others
EARP complex
133996369 (vps50)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps54_N
Syndetin_C
Motif
Other DBs
NCBI-GeneID:
133996369
NCBI-ProteinID:
XP_062291908
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All DBs
Position
16:17693937..17802152
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AA seq
967 aa
AA seq
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MQKIKSLMARQGLKSPQESMADLSPVENLRIPSKEELREMREQPIDPQAEQEIIDSIEEV
YFSNDSFDMVQHELEKLPPELNLQELEEYRDKLKKQQAAVSKKVADLILEKQPAYVKELE
RVTALQTNLQLAAVICTNARRQLSVSKEGFTEASLGLLANQRRRQLLTSLLKSLRTIKTL
QRTDVRLSEMLEEEDYPGAIQLCLECQKAASTFKHYSCISELNSKLQDTLEQIEEQLDVA
LSKTCKHFDVAHYTKVQLAYKLLGKTQTAMDQLHMHFTQAIHNTVFQVVLGYVELCAGNA
DTKFQKMQYKDLCTHITPDSYIPCLTDLCKALWEVMLSYHRTMQWHEEHDKLETTPTPDG
AAAAESDELVVDRSYVKKKLEHGLTRIWQDVQLKVKAFILGTDMSNFKYDDFIVVLDVIS
RLMQVGEEFCGSKSEVLQESIKRQSVNYFKNYHRARLEELRMFLENETWELCPVKSNFNI
AQLHEFKFMGQCRSPSVSPSRQAVSSTSQAQEELYLFQQFLQEGNPFEMHIENKEEETED
VLASNGYESDELEKSVYQDYDSDSDVPEELKQDYVDEQTGDAPLKSASRETMRSKKKSDY
NLNKTNAPILTNTTLNVIRLVGKYMQMMNILKPIAFDVIHCVSQLFDYYLYAVYTFFGRN
DMYESSGLGLISSRLRTTLNRIQESLIDMEAVGENAGVHGPTEDKKEKVPSPHLSQLVVL
TNSGTLYGLAQRVVATESLVFLAEQFESLQSHLDTMMPAAKKPFLQQFYSQTVSTASELR
KPIYWIVAAKAIDYEQMLLMMAGVKWDIREIMSQHNVYVDVLLKEFEQFNKRLGDVSRHV
RIPLPVSNVLWEHCIRLANRTLVEGYANVKKCSNEGRALMQLDFQQFLMKLEKLTDLRPI
PDKEFVETYIKAYYLTENDMEQFIKNHREYSMKQLANLVNVCLGSHINKKARQKLLAAID
DIDRPKR
NT seq
2904 nt
NT seq
+upstream
nt +downstream
nt
atgcagaagatcaagtctctgatggcccggcagggtctgaaaagcccccaagagagcatg
gcagacctcagtcctgtggagaacctgaggatcccgagcaaggaggagctgcgggagatg
agggagcagcccattgaccctcaggcggagcaggagattatcgacagcatcgaggaagtc
tacttctctaacgactctttcgacatggtgcagcacgaactggagaaactcccacctgag
ctgaacctgcaggagctggaggagtacagagacaagctgaagaaacagcaggcagctgtt
tctaaaaaggtcgccgatctcattctggaaaaacagcctgcttatgtcaaggaactggag
agagtgacggcgttgcagaccaacctgcagctggcagctgtcatttgcactaatgcgagg
aggcaactgagcgtgtcaaaggaaggattcacagaggccagcctgggcctattggccaat
cagagaagacgacaattgctgacaagcctgctcaagtcgctgaggaccatcaagacgctg
caaagaacagatgtaagactgagcgagatgcttgaggaggaagactatccaggtgctatc
cagctctgtctggaatgccagaaggctgccagcaccttcaaacactacagctgcatcagt
gaattgaattccaaactacaagacactttggagcaaatagaggagcagcttgatgtcgcc
ctgtcgaagacttgcaagcactttgatgttgcgcactacaccaaggtccagctggcctac
aaactcctgggcaaaacacagaccgccatggaccagctgcacatgcacttcactcaggcc
atccacaacactgtgttccaagtggtgttgggatatgtggagctgtgtgccggtaatgct
gataccaagttccagaaaatgcagtacaaggacctgtgcacgcatatcaccccagacagc
tacattccctgcctgacagacctatgcaaggcattgtgggaggtgatgctgagctaccac
cgcaccatgcagtggcacgaagagcatgacaaattggagaccacacccaccccagatggt
gcggcagcagcagaatctgacgagttggtggtggaccgcagctatgtgaagaagaagctg
gagcatggactgacccggatctggcaggatgtccagttgaaagtgaaggccttcatcctg
gggacagacatgtctaacttcaagtacgacgatttcatagtggtgctggatgtcatcagc
aggttgatgcaggtgggcgaggagttctgtggcagtaaatcggaggtcctgcaagagtct
atcaaacgccagagtgtaaactactttaaaaactatcacagggcacgactggaagagctg
agaatgtttctggaaaatgagacgtgggaactttgtccagtcaagtccaactttaacatc
gctcagctccacgagtttaagttcatgggccagtgccgctccccgtctgtttccccgagc
agacaggctgtgtcgtcgaccagccaggcccaggaggagctgtatctcttccagcagttt
cttcaggagggaaacccctttgagatgcacattgagaacaaagaggaggagacggaggat
gtgctggcatctaacgggtatgaatccgatgagctggagaagagtgtgtaccaggattac
gacagtgacagcgatgtcccagaggagctcaagcaggactatgtggatgaacagacgggt
gatgcccccctcaagagtgcatcccgagagactatgagaagcaagaaaaagtcagactac
aaccttaataagaccaatgcaccaatcctcaccaacaccaccctcaacgtcatccggctt
gtcgggaagtacatgcagatgatgaatattctgaagccgatcgcctttgatgtcatccac
tgtgtgtcccagctctttgactactacctgtatgctgtatacaccttctttggacgcaat
gacatgtatgagtcatcgggtctgggccttatcagcagcagactgagaaccacactgaac
cggatccaggagagccttattgacatggaggcagtgggggaaaatgcaggagtgcacggc
cccacagaggacaagaaggagaaagttcccagcccccatctcagccaactagtggtcctc
actaacagtgggactctttatgggctggcacagagagtggtggccactgagtctcttgtg
tttttggctgaacaatttgagtcccttcaatcccacctggacacaatgatgcctgcagcc
aagaagcccttcctgcaacagttttattcccagacggtgtccacagccagtgaactgcgg
aaaccaatatactggattgtggcagccaaggccattgactatgaacaaatgttgctgatg
atggctggagttaaatgggacattagggagataatgtcacagcacaatgtatatgtggac
gttctgttaaaggaattcgagcagtttaacaagcgacttggtgatgtttccagacatgtg
cgcatcccactgcccgtgtctaacgtcctgtgggagcactgcattcgcttggccaacagg
actcttgtagagggctatgctaatgtgaagaaatgcagcaatgagggccgggccctgatg
cagctggactttcaacagttcctgatgaagctggagaagctgaccgacctgcggccaatc
cccgataaggagtttgttgagacctacatcaaggcctactacctgactgagaacgatatg
gagcagttcatcaagaatcacagggagtactccatgaagcagctagccaacttggtgaac
gtttgcctgggttcacatataaacaagaaggcccgccagaaacttctggcagccattgat
gacattgacagacccaagagatag
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