Scomber scombrus (Atlantic mackerel): 133996420
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Entry
133996420 CDS
T10651
Symbol
rbbp4
Name
(RefSeq) histone-binding protein RBBP4
KO
K10752
histone-binding protein RBBP4
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03082
ATP-dependent chromatin remodeling
ssco03083
Polycomb repressive complex
ssco04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
133996420 (rbbp4)
03083 Polycomb repressive complex
133996420 (rbbp4)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
133996420 (rbbp4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ssco03036
]
133996420 (rbbp4)
Chromosome and associated proteins [BR:
ssco03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
133996420 (rbbp4)
Histone modification proteins
HAT complexes
HATB complex
133996420 (rbbp4)
HDAC complexes
Sin3A-HDAC complex
133996420 (rbbp4)
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
133996420 (rbbp4)
PRC2.2
133996420 (rbbp4)
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
133996420 (rbbp4)
Heterochromatin formation proteins
Other heterochromatin formation proteins
133996420 (rbbp4)
Chromatin remodeling factors
NuRD complex
133996420 (rbbp4)
NuRF complex
133996420 (rbbp4)
NuRF complex (fruit fly)
133996420 (rbbp4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
CAF1C_H4-bd
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
WDR55
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_WDR75_1st
Beta-prop_EML
EIF3I
WD40_MABP1-WDR62_2nd
WD_LRWD1
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR19_1st
WD40_RFWD3
Beta-prop_DCAF12
Beta-prop_RIG_1st
ANAPC4_WD40
WD40_MABP1-WDR62_1st
MIOS_WD40
eIF2A
Beta-prop_IFT140_1st
Beta-prop_SPT8
NBCH_WD40
Beta-prop_DCAF4
Motif
Other DBs
NCBI-GeneID:
133996420
NCBI-ProteinID:
XP_062291973
LinkDB
All DBs
Position
16:21001294..21007157
Genome browser
AA seq
425 aa
AA seq
DB search
MADKEVGAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVSRPEGK
DYSVHRLVLGTHTSDEQNHLVIASVQLPNDDAQLDASHYDSEKGEFGGFGSVTGKIEIEI
KINHEGEVNRARYMPQNPCIIATKTPTSDVLVFDYTKHPSKPDPSGECHPDLRLRGHQKE
GYGLSWNPNQSGSLLSASDDHTICLWDISAVPKEGKIVDAKTIFTGHTAVVEDVSWHLLH
ESLFGSVADDQNLMIWDTRSNNTSKPSHAVDAHTAEVNCLSFNPYSEFILATGSADKTVA
LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDT
EDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEDPEGSTD
PEATV
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atggcagataaagaagttggtgcatttgatgatgcggtggaggagagggtgataaatgag
gagtacaagatctggaagaaaaacactccttttctctatgatttggttatgacccacgcc
ttagagtggcccagcctcactgctcagtggctgcctgatgtttccaggccagaggggaag
gattacagtgtgcatcggctggttttgggcactcacacatctgatgaacagaatcacctg
gtcattgcgagcgtccagctgcccaatgatgatgcccagcttgatgcctcacattatgac
agcgaaaaaggagagtttggaggctttgggtctgtgacgggaaagattgagatagaaatc
aagattaaccatgaaggagaggtgaaccgtgcccgatacatgcctcagaacccatgcatc
attgccaccaagacccccacatcagacgtgctggtgtttgattacactaagcacccctca
aagccagatccatctggagagtgtcaccctgatctgcgtctcagaggccatcagaaagaa
ggttacggtctctcctggaatccaaatcagtctggctccctgctcagtgcttcagatgac
cacacgatctgcctgtgggacatcagtgctgttccaaaggaggggaagatagtggatgcg
aagacaatcttcactggtcacactgctgtggtggaggacgtctcctggcacttgctccat
gagtcactctttggatctgtagcagatgaccagaatctcatgatttgggacactcgttca
aacaacacctccaaacccagccatgcagtagacgcccacacagccgaggtcaactgtctg
tcatttaatccttacagcgagttcatccttgccaccggctcagcagacaagactgtggct
ctttgggacttgaggaacttgaaattgaagctgcattccttcgagtcacacaaggatgag
atcttccaggttcagtggtcacctcataatgagaccatactggcatccagtggaaccgac
cgtcgcctcaatgtttgggacctcagcaaaatcggagaagagcagtctccagaagatact
gaggatggccctcctgagcttctgttcatccatggaggccacacagccaagatctctgat
ttctcctggaaccccaacgaaccctgggtcatctgctcagtgtctgaagacaacatcatg
caagtctggcaaatggctgagaacatctacaacgatgaagatcctgagggttcgacagac
cctgaagccacagtgtaa
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