Scomber scombrus (Atlantic mackerel): 133996542
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Entry
133996542 CDS
T10651
Symbol
irx1b
Name
(RefSeq) iroquois-class homeodomain protein IRX-1b
KO
K24889
iroquois-class homeodomain protein IRX
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ssco03000
]
133996542 (irx1b)
Transcription factors [BR:
ssco03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain TALE
133996542 (irx1b)
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Gene cluster
GFIT
Motif
Pfam:
Homeobox_KN
Homeodomain
Motif
Other DBs
NCBI-GeneID:
133996542
NCBI-ProteinID:
XP_062292113
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Position
16:21852684..21856084
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AA seq
459 aa
AA seq
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MAFPQLGYPQFLSASHEVYGGERPASAREGATEGGVSSSATAAAVGSMLGMYGSPWAAHN
YSAFLPYSGATDLALITQMGSQYDLKDSPGSHAASLPVHAAQGFYPYGQYPYGDPSRAKT
ATRETTSTLKAWLQEHQKNPYPTKGEKIMLAIITRMTLTQVSTWFANARRRLKKENKVTW
GRSAEDRDGRIFSSDNEDEHGKNGSDDEDDEEEIDLETVDIERPEEQRAGEQDTEKGEGE
AGLAAREASEPKSSESSRTLSVEGLRRVEAAISLNKSPVVKLAVDHSPSRQECQRPPQSK
PKIWSLAETATAPDSSHKLSPAAHAHHPALASAGHPALLPGHGIYTCQIGKLHNWANAAF
LNANSLLNMRSLLGGAPAGHLPLQGAVPAARHDARPAVTGPGTSGTEDDSDVESSGSFSP
KRDDEESDHRPDSLKSPFQLITDRPHHGTAAQRVLTSTL
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atggctttccctcagctggggtacccccagttcctcagtgcctcccatgaggtgtacggg
ggcgagcggccggcctctgcccgagaaggagctaccgaaggcggcgtgagctcgtccgct
accgccgctgctgtcggctccatgctggggatgtacgggagcccatgggcggctcataac
tacagtgcctttctgccgtacagcggagccacagacctcgccctcataacccagatgggc
tcacagtatgatctgaaggacagcccgggctcccacgcagcctctctgcctgtccacgcc
gctcaaggcttctacccgtatggccagtatccgtacggagacccgtcgagggccaagacg
gccactagggagaccaccagcaccctgaaggcctggctgcaggagcaccagaagaacccc
taccccaccaaaggagagaagatcatgcttgccatcatcacgaggatgacactcacacag
gtgtcgacatggtttgcgaacgcccgcaggcggctgaagaaggagaacaaggtaacctgg
ggccgcagcgccgaggacagggacggacgcatcttcagcagcgacaacgaggacgagcac
ggcaagaacggcagcgacgacgaagacgacgaggaggagattgatttggaaactgttgat
atcgagagacccgaggagcagcgagcaggggagcaggacaccgaaaagggggagggagag
gcaggcctggccgccagagaggcctcggagccgaagagctcagagagcagcaggacgctt
tctgtagagggcctgagaagagtcgaggcggctatttctctcaataagtcgcctgttgtc
aaactcgcagtggatcattctccaagcagacaggagtgccagagaccaccccagagcaaa
cccaaaatctggtcactggctgagaccgccacggcccccgacagctctcacaaactttcc
cccgcggcccatgcacaccatccggctttggcctctgccggccacccggccttactcccg
ggtcatgggatatatacatgccagattggcaagctgcacaactgggccaacgcggctttt
ctgaatgccaactctcttttgaacatgagatcgctcctcggaggggcgccggcaggacac
ctgcctctccaaggcgcagtgccggctgcgcgtcatgacgcacgaccagcggtgacgggc
cctggaacttcggggacggaagacgacagtgatgtagagtcgtcaggaagtttcagtcca
aaaagagatgacgaagagagcgaccacaggcctgactcccttaagtccccattccagctg
atcactgacagacctcaccatggcacagcagcacagcgagttctgacatcaacattatga
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