Scomber scombrus (Atlantic mackerel): 133996590
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Entry
133996590 CDS
T10651
Symbol
exosc7
Name
(RefSeq) exosome complex component RRP42
KO
K12589
exosome complex component RRP42
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133996590 (exosc7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssco03019
]
133996590 (exosc7)
Messenger RNA biogenesis [BR:
ssco03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
133996590 (exosc7)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
133996590 (exosc7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
133996590
NCBI-ProteinID:
XP_062292178
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Position
16:7645680..7651375
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AA seq
291 aa
AA seq
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MATVQVSEAEKVYILHGIRDDLRVDGRGCEDYRHTEIETDVVSNTDGSAKVTLGHTAVLV
GIKADLGKPKPMLPKEGYLEFFVDCSANATPEFEGRGGEELGTELSNTLYKVFNNKHSVD
LKSLCISPGEHCWVLYVDVLLLQCDGNLYDAISIAIKAALFSTKIPKVHISADEEGAKEI
ELSDDPYDCMRLNVENVPCIVTLCKVGHRHVVDATLQEKACSVASLIISVTQKGTVTCMR
KVGGGSLDPESIFEMTEAGKRVGKALHAPLMDLLQQEERLGTKRQKVGFLG
NT seq
876 nt
NT seq
+upstream
nt +downstream
nt
atggcgacagtacaagttagtgaggctgagaaagtgtatattttacacggtataagggat
gatctgagagtggatgggagaggctgtgaggactacagacacacggagatagagactgat
gtggtgtccaacacagacggatcagctaaagtcacactgggacacacagctgttctggtt
gggattaaggctgacctcggaaaaccgaagcccatgttacctaaagagggttatctggag
tttttcgttgattgttctgccaatgcgacccctgaatttgaggggcgaggaggcgaggag
ctcggcacggagctgagtaacactctctacaaagtctttaacaacaaacacagtgtggac
ttaaagagcctctgtatcagtcctggagaacactgctgggtgctttatgtggacgttctg
ctcctacaatgtgatggaaacctgtatgatgccatctcaatagctatcaaggcagctctc
ttcagcactaaaattcctaaagtgcacatatcagctgacgaagaaggagcgaaggagatc
gagctgtcagatgacccgtatgattgtatgaggctcaacgtagaaaacgttccctgcata
gtgacgctgtgcaaggtaggccaccggcacgtggtggacgcgactctgcaggagaaggcg
tgctccgtggcgagcctcatcatctccgtcacacagaagggcacggtcacctgcatgagg
aaggtgggcggaggcagcctcgacccagagagcatctttgaaatgacagaggcaggtaaa
cgtgttgggaaagcccttcatgctccgctcatggatctgctgcagcaggaggaacgtttg
ggaacaaaacgacagaaagtgggcttcctcggttag
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