Scomber scombrus (Atlantic mackerel): 133996656
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Entry
133996656 CDS
T10651
Symbol
col1a2
Name
(RefSeq) collagen alpha-2(I) chain
KO
K06236
collagen type I alpha
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04510
Focal adhesion
ssco04512
ECM-receptor interaction
ssco04518
Integrin signaling
ssco04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
133996656 (col1a2)
04518 Integrin signaling
133996656 (col1a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
133996656 (col1a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
133996656 (col1a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ssco00536
]
133996656 (col1a2)
Glycosaminoglycan binding proteins [BR:
ssco00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
133996656 (col1a2)
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
133996656
NCBI-ProteinID:
XP_062292246
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Position
16:17979810..17995745
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AA seq
1269 aa
AA seq
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MMGPRGPPGPPGPPGAQGHTGHAGEPGEPGQTGHLGARGPPGPPGKAGEDGNNGRPGKPG
DRGTPGPQGARGFPGTPGLPGMKGHRGYTGLDGRKGEPGAAGLKGESGAHGAAGSPGLAG
ARGSNGERGRVGPAGPAGARGADGNVGPTGPAGPIGSAGPPGFPGGPGPKGEIGGAGATG
PSGPQGSRGEPGPNGAGGPVGPPGNPGNNGLNGAKGAAGLPGVAGAPGFPGPRGGPGPQG
PQGAAGARGLAGDPGSQGIKGDSGAKGEPGNAGPQGQTGPQGEEGKRGPTGELGGPGPAG
NRGARGAPGSRGMPGSEGRTGPIGMPGARGATGSGGPRGAPGDAGRAGEPGAAGLRGLPG
SPGSSGPLGKEGPAGPAGQDGRTGPPGPTGPRGQPGNIGFPGPKGPSGDAGKPGDKGATG
PTGLRGLPGPDGNNGGTGAMGPAGGSGEKGEQGPSGAPGFQGLPGPAGPGGEAGKSGDRG
IPGDQGVVGPSGGKGERGNPGVAGASGAQGPIGARGPAGAPGADGGKGEPGALGAAGGPG
HQGPGGMPGERGAAGAPGGKGEKGEPGHRGPDGNGGRDGARGLQGPSGPPGPTGANGDKG
ESGSFGPAGPAGPRGSPGERGEVGPSGSSGFAGPPGADGQPGARGERGPGGGKGEVGPSG
PAGPSGQSGPAGASGPSGPTGARGDNGPNGLTGFPGAAGRVGAAGPSGIVGPPGPAGLSG
KDGPRGLRGDPGPSGPSGDQGMIGVPGPAGEKGPSGEAGPPGPAGIAGIPGSLGLQGFVG
LPGARGDRGSPGGAGAGGEGGRVGPAGAPGARGPPGNIGLPGMTGPQGEAGREGSPGNDG
PPGRAGVAGFKGDRGEPGSGGAMGLSGAPGPAGPSGGAGRPGNRGESGPSGPAGAVGPAG
ARGGAGPSGPRGEKGGAGDKGERGMKGLRGHPGLQGMPGPSGPSGDTGSAGLNGPSGPRG
PAGPHGPAGKDGRAGGHGTIGSPGARGPPGYVGPAGPPGSPGLPGPPGPAGGGYDVSGGY
DMEYRADQPSLRAKDYEVDATIKSLNTQIDNLLTPEGSRKNPARTCRDIRLSHPEWSSGF
YWIDPNQGCTNDAIKVFCDFTTRETCIYAHPESIARKNWFRSTEGKKHVWFGETINGGTE
FTYNDETLSPQSMATQLAFMRLLSNQASQNVTYHCKNSVAYMDGESGNLKKAVVLQGSND
VELRAEGNSRFTFSVLEDGCTRHTGDWSKTVIEYRTNKPSRLPILDIAPLDIGGADQEFG
LDIGPVCFK
NT seq
3810 nt
NT seq
+upstream
nt +downstream
nt
atgatgggacctagaggcccacccggacctcctggaccccctggagctcagggacacacc
ggacatgctggagagcccggagagcccggacagacaggacacctcggtgctcgtggcccc
ccaggacctcctggcaaagctggagaggacggtaacaatggcagacctggcaagcccgga
gacagaggtacccccggccctcagggtgctcgtggattccccggaacccctggacttcct
ggaatgaagggacacagaggttacactggtctggatggacgcaagggagagcccggtgct
gctggccttaagggtgagtctggtgctcacggagctgctggaagccctggacttgctgga
gctcgtggttctaatggtgagagaggtcgtgttggccctgctggccctgctggtgctcgt
ggtgctgatggcaatgttggacccactggccccgctggccccattggttctgctggtccc
ccaggtttccccggtggtcccggacccaagggagagattggaggtgctggagctactggc
ccatctggacctcagggatctagaggagagcccggacccaatggtgctggtggccccgtt
ggtccacctggtaaccctggtaataatggcctgaatggagccaagggagccgctggcctc
cctggtgttgctggagctcctggcttccctggaccaagaggaggacctggaccccagggc
cctcagggtgctgctggtgccagaggtttggctggagatccaggttctcagggtattaag
ggagattctggtgccaaaggagagcctggtaacgctggacctcagggacaaaccggacct
cagggtgaggagggcaagagaggacctactggtgagcttggtggccctggacccgctggc
aaccgtggagctagaggtgctcctggaagccgtggaatgcctggttctgagggaagaact
ggccccattggcatgcctggtgcccgtggtgccactggctcaggtggacctcgtggagcc
cctggagatgctggccgtgctggtgagcctggtgctgctggtctcaggggtctcccagga
agccctggaagctctggaccccttggaaaggagggacctgctggtcctgctggacaagat
ggccgcaccggtccacccggaccaactggacctagaggccagcccggaaacattggcttc
ccaggacccaaaggaccttctggtgacgctggcaagcctggagacaagggagccactggc
cccactggactgagaggacttcctggacctgatggcaacaatggaggcactggagctatg
ggacctgctggcggttctggtgagaagggagagcagggaccatctggagctcctggcttc
cagggtctgcccggccccgctggacctggtggagaggctggcaagtctggagacagaggt
atcccaggagaccagggagttgttggaccttctggtggcaagggggagcgtggtaaccct
ggtgttgctggagcttctggagctcagggaccaattggagcccgtggacccgctggagca
cctggtgccgatggtggcaagggagagcccggcgctcttggagctgctggtggacctgga
caccagggacccggtggcatgcctggtgagcgtggagctgctggtgcacccggaggaaag
ggagagaagggagagcctggacacagaggacccgatggtaatggtggaagagatggtgcc
cgtggactgcaaggacccagtggaccccctggacctactggagccaatggtgataagggt
gagagcggttccttcggacccgctggccccgctggaccccgtggatctcctggagagcgt
ggagaagttggaccttctggatcttctggattcgctggaccccctggtgctgatggtcag
cctggtgcaagaggagagcgtggacctggaggtggaaagggagaagttggcccctctggc
cctgctggaccctctggacagtctggacctgctggtgcttccggtccttctggacccact
ggtgcccgtggagacaatggccctaatggtctgactggtttccctggagctgctggcaga
gttggtgctgctggtccttctggtattgttggaccccctggtcctgccggtctctctggt
aaggatggtccccgtggtctccgtggagatccaggtccctctggtccatctggagaccag
ggtatgattggagtacctggtccagctggagagaaaggaccctctggagaggctggtccc
cctggtcctgccggtattgctggaattcctggtagccttggtcttcaaggatttgttggt
ctgcctggagctagaggagatcgtggttcacctggtggtgctggtgctggtggagagggt
ggtagagttggacccgctggtgctcctggtgcccgtggtccccctggcaacattggcctg
cctggtatgactggacctcagggagaggctggacgtgagggtagccctggtaacgatgga
cctcctggccgtgctggtgttgctggattcaagggagaccgtggtgagcctggatccggt
ggagccatgggactttctggagcccctggacctgctggacccagtggaggtgctggcaga
cctggaaaccgtggagagtctggccccagtggtcctgctggagctgttggacctgccgga
gctagaggcggcgctggaccttctggaccccgtggtgagaaaggaggtgctggagacaag
ggggagagaggcatgaagggtctgcgtggacatcctggtctgcagggaatgcccggacct
tctggaccttctggtgacactggatctgctggtcttaacggaccttctggacctagaggc
cctgctggaccccacggacccgctggtaaggatggcagagctggcggtcatggtaccatt
ggctcccctggtgctcgtggaccccctggatacgttggccccgctggtcctcctggatct
cctggtctgcccggacctcccggtcccgccggtggtggatacgatgtctctggtggttac
gatatggagtacagagctgatcagccttccctgagagccaaggactacgaggttgatgcc
accatcaagtccctcaacactcagatcgataacctgctcactcctgagggatccaggaag
aaccctgcccgcacctgccgtgacatcagacttagccaccctgaatggagcagtggattc
tactggattgaccccaaccagggctgcaccaatgatgccatcaaggtcttctgtgacttc
accacccgtgagacctgcatctacgcccaccctgagagcattgcccgcaagaactggttc
agaagcaccgagggcaagaagcacgtctggttcggagagaccatcaacggtggtactgag
tttacctacaacgatgagaccctcagcccccagagcatggccacccagctggccttcatg
cgtctgctgtccaaccaggctagtcagaacgtcacctaccactgcaagaacagcgttgcc
tacatggatggtgagagcggcaacctgaagaaggcagtggtgctccagggctccaacgat
gtggagctgagggccgagggcaacagccgcttcaccttctccgtgctggaggatggctgc
actagacacactggtgactggagcaagacagtgattgagtacagaacaaataaaccatct
cgcctgcccatcctcgacattgcacctttggacattggtggagctgatcaggagtttggt
ttggacattggcccagtctgtttcaaataa
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