KEGG   Scomber scombrus (Atlantic mackerel): 133997154
Entry
133997154         CDS       T10651                                 
Name
(RefSeq) histone deacetylase 2
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
ssco  Scomber scombrus (Atlantic mackerel)
Pathway
ssco03082  ATP-dependent chromatin remodeling
ssco03083  Polycomb repressive complex
ssco04110  Cell cycle
ssco04330  Notch signaling pathway
ssco04350  TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:ssco00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    133997154
   03083 Polycomb repressive complex
    133997154
 09130 Environmental Information Processing
  09132 Signal transduction
   04330 Notch signaling pathway
    133997154
   04350 TGF-beta signaling pathway
    133997154
 09140 Cellular Processes
  09143 Cell growth and death
   04110 Cell cycle
    133997154
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:ssco03036]
    133997154
Enzymes [BR:ssco01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     133997154
Chromosome and associated proteins [BR:ssco03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     133997154
   HDAC complexes
    Sin3A-HDAC complex
     133997154
    BRAF-HDAC complex
     133997154
    REST complex
     133997154
    SHIP complex
     133997154
    MiDAC complex
     133997154
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     133997154
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    133997154
  Chromatin remodeling factors
   NuRD complex
    133997154
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 133997154
NCBI-ProteinID: XP_062292673
LinkDB
Position
17:26380968..26393243
AA seq 489 aa
MAYTTAGGTKKKVCYYYDGDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHK
ATAEEMTKYHSDDYIKFLRSIRPDNMSEFSKQMQRFNVGEDCPVFDGLFEFCQLSAGGSA
AGSVKLNRQQTDIAVNWSGGLHHAKKSEASGFCYVNDIVLGILELLKYHQRVLYIDIDIH
HGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNFPLRDGIDDESYE
RIFKPVMAKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTIRGHAKCVEYIKSFNLPLLML
GGGGYTIRNVARCWTYETSVALDTDIPDELPYNDYFEYFGPDFKLHISPSNMTNQNTQEY
MDKIKQRLFENLRMLPHAPGVQMQAIPEDAVPADTLDEDTEDPDKRLSIRATDKRIACDE
EFSDSEDEGEGGRRNAANHKKGAKRPKVEEDKKEGEEKKAEIKEEEKTKESSAENTDSKS
VKTEQTSSA
NT seq 1470 nt   +upstreamnt  +downstreamnt
atggcttacacgaccgcgggagggactaagaagaaggtgtgctactactacgacggtgac
ataggaaattattactatggacagggacatccaatgaaaccacatcgcatccggatgact
cacaacctgcttctgaactatggactgtacaggaaaatggagatctatagaccacacaaa
gccacggccgaggagatgacaaaatatcacagcgacgactacatcaagttcctccgatcc
atacgacctgacaacatgtctgagttcagcaagcagatgcagcgcttcaatgttggagag
gactgtcctgtgtttgatggcttgtttgagttctgccaactctctgctggtggttctgct
gctggatcagtgaagctgaaccgacagcagactgacatcgcagtgaactggtcaggagga
ctccaccacgccaagaagtccgaagcctctggattctgctacgttaatgacattgtgctg
ggcatcttggagctgctcaagtaccaccagagggtgctctacatcgatatagacatccac
cacggtgatggagtggaggaggccttctacaccacagacagggtcatgactgtctccttc
cataaatacggggagtacttccctggaaccggagacctcagggatattggagctggaaaa
ggaaaatattatgctgtcaacttccctctgcgggatggcatcgacgacgagtcgtatgag
cggatcttcaagcctgtgatggccaaagtgatggagatgtaccaacccagcgctgtggtc
ctccagtgtggtgcagactctctctcaggagaccgcctcggctgctttaacctcaccatc
cgcggacatgccaagtgtgtggagtacatcaagtccttcaacctcccgctgctcatgctg
ggcggaggaggatacaccatccgcaacgtggcccgctgctggacctacgagacgtccgtg
gctctggacacagacatccctgacgagctgccgtacaacgactacttcgagtacttcggc
cccgacttcaagctgcacatcagcccgtccaacatgaccaaccagaacacacaggagtac
atggacaagatcaagcagcggctgtttgagaacctgcggatgttgcctcatgctcccggg
gtgcagatgcaggccatcccagaggacgctgttccagctgacacgctggacgaggacacc
gaggatccagacaaacggctgtccatccgtgccacagacaagaggatagcctgcgacgaa
gagttctctgactccgaggatgagggagagggaggcaggaggaacgcagccaatcacaag
aagggagccaaaaggccgaaagtagaagaagacaagaaggaaggagaggagaagaaagct
gagataaaagaggaggagaaaacaaaggagagcagtgctgagaatacggactcaaaaagc
gtcaagactgagcagaccagcagtgcctga

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