Scomber scombrus (Atlantic mackerel): 133997171
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Entry
133997171 CDS
T10651
Symbol
fdft1
Name
(RefSeq) squalene synthase isoform X1
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco00100
Steroid biosynthesis
ssco01100
Metabolic pathways
Module
ssco_M00101
Cholesterol biosynthesis, FPP => cholesterol
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
133997171 (fdft1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
ssco01006
]
133997171 (fdft1)
Enzymes [BR:
ssco01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
133997171 (fdft1)
Prenyltransferases [BR:
ssco01006
]
Terpene biosynthesis
Squalene/phytoene synthase
133997171 (fdft1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SQS_PSY
MVD-like_N
HAUS4
TM1266-like
Motif
Other DBs
NCBI-GeneID:
133997171
NCBI-ProteinID:
XP_062292697
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All DBs
Position
17:15037394..15046162
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AA seq
457 aa
AA seq
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MAGACCKCQVSLTVFKRSLSVAPRGSGSAARSLLPGWRMAERGLQEAARPSSALRPAGLY
RHTVFSYLSCQESMSDSLRTCYLYLNQTSRSFAAVIQALDGELRHAVCIFYLVLRALDTV
EDDMSIPLDKKVPMLNDFHTYLYQDEWSFSESQEKDRQVLEDFPTISLEFRNLALEYRDV
ISDICHRMGVGMAEFLEKKVGSMKEWDQYCHYVAGLVGIGLSRLFSASQLEDPEVGRDTE
LANSMGLFLQKTNIIRDYLEDTQEGRAFWPQEAWSQFAGRLEDLAQPEKLESALSCLNLL
VTDALRHVPDVITYLSRLRNQSVFNFCAIPQVMAIATLSLCYNNPLVFQRVVKIRKGQAV
TLMMEATNMRAVQTIITQYSQEILQKVSLTDPSRDKTLHILALIREKSALSQSSLPSRTH
HLSPMYLSAAMLLAALSWQYLSTTAAQAQGTNDMQGQ
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atggccggagcttgctgcaagtgtcaagtctctttaaccgtgttcaagcgctctctctcg
gtggcgccgcggggctctgggtccgctgcacgatcgctcctaccgggctggaggatggcg
gagcggggcctgcaggaggccgcccgaccctccagcgccctaagacccgcaggcttatac
cgacacacggtcttctcttatctctcctgccaggagtccatgagcgacagcctgcggacc
tgctacctgtacctgaaccaaaccagccggagttttgcagctgtgattcaagcgctggac
ggagagttaagacatgcagtttgtattttctacctggtcctgcgggcactggacacagtg
gaggatgacatgagcatccctctggacaagaaggtacccatgctgaatgatttccacacc
tacctctaccaggatgagtggagtttcagtgagagccaggagaaagaccggcaggttctg
gaggatttccccacgatatcactggaattcagaaaccttgctcttgagtacagagatgtc
atctcagatatctgccaccgtatgggagtaggaatggccgaattcctggagaagaaagta
ggatccatgaaggagtgggaccagtattgccactatgtggcagggctggtcggcatcgga
ctgtctcgcctcttctccgcgtctcagctcgaggaccctgaggtggggcgtgacaccgag
ctggccaactccatgggactgttcctccagaagaccaacattatccgagactatctggag
gacacacaagaggggcgtgctttctggccacaagaggcgtggagccagttcgcaggtcgc
ctggaggacttggctcagccagagaagttggagtcggctctgtcctgcctcaacctgctg
gtcactgatgctctgcgccacgtcccagatgtcatcacctacctgtcccgcctgcggaac
cagagcgtcttcaatttctgtgccattccacaggtgatggcaatagcgacactatctttg
tgctacaacaacccattggtgttccagcgagtagtaaaaatccgaaagggacaagctgtc
acactcatgatggaggccaccaacatgagagctgtgcagaccatcatcacccagtacagc
caggagattctacagaaggtctccctcactgacccgtcacgggacaagaccctgcacatc
ctggcgctaatccgagagaagtccgccctgtcacagtcgagcctcccctccaggacccac
cacctttcacccatgtacctatctgctgccatgctgctcgccgctctcagttggcagtac
ctcagcaccactgcagcacaggcgcagggtaccaacgacatgcagggacagtga
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