Scomber scombrus (Atlantic mackerel): 133997184
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Entry
133997184 CDS
T10651
Symbol
hbs1l
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
133997184 (hbs1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssco03019
]
133997184 (hbs1l)
Messenger RNA biogenesis [BR:
ssco03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
133997184 (hbs1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
AAA_22
GTP_EFTU_D4
DO-GTPase2
Motif
Other DBs
NCBI-GeneID:
133997184
NCBI-ProteinID:
XP_062292721
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Position
17:13626560..13649118
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AA seq
702 aa
AA seq
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MSRHRNVRGYNYDEDFEDDDMYGQSVDDDYCISPATANQFIYSRRERQAPKEEPLEEEGY
EDEDVPVSPTVSHNLDPLDQAKLYSCLDHMRTVLGDAVSDSVLSEAAIRCGFDPQKALDA
VLSEEGKTAPVAKTTSEVTASVMGVSQEKAPLPQRTKQAAVTEKAKSREVSHNKLDSEVL
PKVARMTVSGKKQTMGFDVPSTGENGVVTASVRRGGSPENATMAPASEAASKRPETPSKG
SNGDETTTVPTPGRSSGKAKQTINVKAELEKRQGGKPLLNLVVIGHVDAGKSTLMGHLLY
LLGNVNKRTMHKYEQESKKAGKASFAYAWVLDETGEERDRGVTMDVGMTKFETNSKVVTL
MDAPGHKDFIPNMITGAAQADVAVLVVDASRGEFEAGFEAGGQTREHALLVRSLGVLQLA
VAVNKMDQVNWQQERFQEIISKLGHFLKQAGFKDSDVFYIPTSGLSGENLATRSLVAQLT
SWYSGPSLLEQIDAFKAPQRSVDKPFRLCVSDVFKDQGSGFCVTGKIEAGYIQTGERILA
MPPNETCTVKGITLHDEALDWAAAGDHVSLTVTGMDIIKINVGCVFCDPKEPIRACTRFR
ARILLFNIEVPITQGFPVLLHYQTVSEPATIRKLISVLHKSSGEVLKKKPKCLGKGMNAI
VEIQTQRPVSLELYKDYKELGRFMLRYVGSTIAAGVVTEIKE
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atgtctcggcacagaaatgtccgaggttacaactacgacgaagactttgaagatgatgac
atgtatggacagtctgtggatgatgactattgtatatcgccagcaacagcaaatcagttc
atctactcacgccgagagaggcaagcaccaaaggaagagcctttagaggaagaaggatat
gaagatgaggatgtacctgtatctccgactgtcagccacaatcttgaccctcttgatcaa
gccaagctgtattcttgtctggaccatatgcggactgtgttgggagatgcagtgtcagac
tcagtcttgagtgaagcagccataagatgtggatttgatccgcagaaggcactggatgca
gtcctgtctgaagaaggaaaaactgccccggttgccaaaactaccagtgaggtgacggct
tccgtaatgggagttagtcaagagaaagctccacttccacaaagaaccaaacaagcagct
gtgactgagaaagcgaaaagcagagaagtgtctcacaataaactggactctgaagtgcta
cccaaagtggcccgcatgaccgtctctggcaagaagcagaccatgggctttgatgttcca
agcacaggggagaatggcgttgtcacagcttcagtacgccgaggtggcagccccgaaaac
gccactatggcacctgcctcagaggccgcctccaaacgtcctgagactccttctaagggg
tcaaatggagacgagaccaccacagttcccactccaggccgctcctctggaaaggccaag
cagacgatcaatgtaaaggccgaactggagaagagacaggggggcaaacctctgttaaat
ttggtggttataggtcatgtggatgcagggaagagcacactaatgggccacctcctttat
ctgctgggcaatgtcaacaaacgcaccatgcacaagtatgaacaggagtcaaagaaagca
ggcaaggcttcttttgcctatgcttgggtcttggatgaaactggcgaggagagggacaga
ggtgtgacgatggatgtgggcatgacaaagtttgagacaaactctaaggtggtgactcta
atggatgcgccaggacacaaagacttcattcccaacatgatcacaggagctgcacaggct
gatgtggcggtgcttgtggtggatgccagccgaggagagtttgaggcgggctttgaggca
ggtggtcagaccagagagcatgcattgttggtgcgttcgcttggcgtccttcagctggct
gtggctgttaacaagatggaccaggtaaactggcaacaagagcgattccaggaaattata
tccaaacttggccattttctcaagcaggcgggattcaaggactctgatgttttctacatc
cccacgagcggcctgtcaggagagaacctagccaccaggagtttggttgcacagctcacc
tcttggtactcaggacccagcctgcttgagcagattgatgccttcaaagcccctcagagg
tctgtggacaaacctttcagactttgcgtctctgatgtgttcaaagaccagggttcaggc
ttctgtgttacagggaagatcgaggctggttatattcagactggagaaagaatacttgcc
atgcctcccaatgaaacgtgcactgtcaaaggtattacactgcatgatgaggctttggac
tgggctgcagcaggagatcatgtcagcctgacggtcactggcatggacatcatcaagatc
aatgttggctgtgtgttctgtgatcccaaggagcctatccgagcgtgcacccgattcaga
gcccgaatcctcctcttcaatattgaggtccccatcacacaaggtttcccagtattgctg
cactaccagacggtcagtgagccagctaccattaggaaactgataagtgttctacataag
agcagtggtgaagtcctcaagaagaaaccaaagtgtttgggaaagggtatgaatgccatt
gtggagatccagacccagaggccagtgtcattagagctttacaaagactacaaggaactt
ggccgcttcatgctgcgctacgtaggctccaccattgctgcaggcgtggtcactgagatc
aaagaatga
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