Scomber scombrus (Atlantic mackerel): 133997197
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Entry
133997197 CDS
T10651
Symbol
vps18
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04140
Autophagy - animal
ssco04148
Efferocytosis
ssco05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
133997197 (vps18)
04148 Efferocytosis
133997197 (vps18)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
133997197 (vps18)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ssco04131
]
133997197 (vps18)
Membrane trafficking [BR:
ssco04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
133997197 (vps18)
Hops complex
133997197 (vps18)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pep3_Vps18
Clathrin
zf-RING_16
zf-C3HC4_2
zf-RING_Vps41
zf-RING_11
zf-RING_5
zf_RING_Vps8
zf-RING_2
zf-RING_UBOX
DUF1664
zf-ANAPC11
zf-C3H2C3
DUF5600
DUF2175
zf-rbx1
DUF4446
Sec8_N
Apolipoprotein
Motif
Other DBs
NCBI-GeneID:
133997197
NCBI-ProteinID:
XP_062292741
LinkDB
All DBs
Position
17:complement(11859570..11865911)
Genome browser
AA seq
979 aa
AA seq
DB search
MASILDEYEDSQNTRQSAQRLSSANIGITHSGFVNVRLEEEKPIFNKQRIDFTPPEKINH
LAVCNNQLCMSLGKDTLLRIDLAKPDQPNQTELGRKDDSKVHRLFLDPTGSHLLISLTTS
ECLYLNRNTQKVRSLSRWRGHLIESVGWNKLLGNETNTGPILVGTSQGNIFEAEISATEG
SLFNTNPDQYFRQVHYLEEDGKPAPVCCLEVERGLENKYFIIATTRKRLFQFVGKVAEGS
EQQGYSSIFSQNQDLLPSFQEFPANMGYSEITFYTSKLRTSPKAFAWMMGNGVLYGQLDY
VRPDSLLSDVQVWEYTPDIDLSSNKPISIVLTQFHFLLLLHDRVKAICTLNGQVVYEDVF
PDKFGSLKKMIKDPVGGLVWIYTERAVFRYHIQREARDVWQMYMSMNKFDLAKEYCRDRP
ECMDMVLAKEAEYCFQNKRYLESAKCYALTQNYFEEIALKFIEAKQEEALKEFLLKKLNN
LKQSERTQITLLVTWLAELYLNRLGLLESDGNTIIFQETRDEFRQFLSTSKHKECLFNNR
TTIYDLLASHGNVDDMVYFSVVMQDYERVISHYCQHDDYSAALDVLSKHCDEKLFYKFSP
VLMQHIPKKVVDAWIQMGKRLDPKKLIPALMNYSQMGSTQQISETIRYMEFCVYELTVTE
EAIHNYLLSLYAKYKPDSLLWYLEQAGTHASEIHYDLKYALRLCAENGYLRACVLVYRIM
ELYEEAVDLALQVDVDLAKSCADLPEDDEELRKKLWLKIARHVVQEEKDVKKAMNCLSSC
NLLKIEDILPFFPDFVTIDHFKEAICSSLEEYNQHIEELKQEMEEATESAKRIREDIQEM
RNKYGVVDSQEKCAACDFPLLNRPFYLFLCGHMFHYDCLFQEVTPQLSTYKQNRLEELQK
KLATSTQSSKSRHRPAPRDDGDTSSLGKGNAGTSREQIKSDIDDVIASECVYCGELMIKT
IDKPFIDPLKFEEEKSSWL
NT seq
2940 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaattctcgatgagtatgaggactcgcaaaacaccaggcaaagtgcgcagcgc
ctttcaagtgccaacatcgggataacacattcaggctttgtgaatgtgagacttgaggaa
gagaagccaatattcaacaagcagaggatcgattttacaccacctgagaagataaaccac
ctggcagtgtgcaacaatcagctgtgcatgagtctgggaaaggacaccctgctgaggatt
gatttggccaagccagatcaacctaatcagactgaattgggaagaaaagatgacagtaaa
gtgcacagactgttcctggaccccacaggctcccatctgctgatcagcctgaccaccagt
gagtgtctgtacctcaacaggaacacccagaaggtgcgcagtctgtcgcggtggagaggc
cacctcattgagagtgtgggctggaacaagctgctgggcaacgagaccaacacaggaccc
atcctagttggcaccagtcaaggcaacatctttgaggctgagatctctgcaactgaggga
agtctgttcaacaccaatccagaccagtacttcagacaggtccactacctggaggaggat
gggaagccagcaccagtctgttgcctggaggttgagcgaggcctggagaacaagtacttc
atcatcgccacaacccgcaaacgcttgttccagtttgtgggtaaggtggctgaagggtca
gaacagcaaggctacagctccatcttcagccagaaccaggatctgctgcccagtttccag
gagttcccagctaacatgggctacagtgagatcacgttctatacctcaaagcttcgcacc
tcccctaaagcattcgcctggatgatgggtaatggagttctttatgggcagctggactac
gtcaggcctgactccctgctgagtgatgtgcaggtatgggagtacaccccggacattgac
cttagtagcaacaaacctatttccattgtgctgacacagttccacttcttgctcctgctt
cacgaccgagttaaggccatctgcaccctgaatggacaggtggtatatgaggacgtgttc
ccagataaatttggttctcttaaaaagatgatcaaggaccctgttggtgggttggtctgg
atctacaccgagcgggcagtctttcggtaccacatccagcgtgaggccagggacgtctgg
caaatgtacatgagcatgaataaatttgatctggccaaagagtactgtcgtgaccggcct
gagtgcatggacatggtgctggccaaggaggcggagtactgcttccagaacaagcgatac
cttgagagtgccaagtgctacgcgctgacacagaactactttgaagagatagcgctcaag
ttcatcgaagccaaacaagaagaggccttgaaggagttcttgctaaagaaactaaataat
ctcaaacagagtgagagaacacagatcaccttgcttgtcacctggctagcagagctgtac
ctgaaccggctcggtctcctggagagtgatgggaacaccatcatcttccaggagacccgt
gatgagttccgccagttcctcagcacctccaagcacaaggaatgcctgttcaacaaccgc
accaccatatatgacctgctggccagccacggtaacgtggacgacatggtttacttctca
gtcgtcatgcaggactatgagagggtgatatcccactactgtcaacatgacgactacagt
gctgctctggatgtgctctccaagcactgtgatgagaagcttttttacaagttttcccca
gtgcttatgcagcatattcccaaaaaagtagtagatgcctggattcagatgggcaagcgg
ctggacccaaagaagctcatcccagctctgatgaactacagccagatgggcagcacccag
cagatcagtgaaaccatccgttacatggagttctgtgtgtatgagctgactgtgactgag
gaggcaatccataactacctgctgtctctctatgccaaatacaagccggactctctgctg
tggtatctagagcaggcaggaacacatgcctcagagatccactatgacctgaagtatgct
ctcaggctgtgtgcagaaaatggctacctcagggcctgtgtcctggtgtataggattatg
gaactgtatgaggaggcagtggatcttgctttgcaagtagatgtagacttggccaagtca
tgtgctgacttgcccgaggatgacgaggagctgagaaaaaagctttggctgaagattgcc
cggcacgtggtgcaagaggagaaagatgtaaaaaaagccatgaactgtctgtccagctgt
aacctgctcaagattgaagacatcctgccattcttccctgactttgtcaccattgatcac
tttaaggaggccatctgtagctccctggaggagtacaaccagcacattgaggagctgaag
caggaaatggaggaggccacagagagcgctaaacgtatcagagaggacatccaggaaatg
aggaacaagtatggcgtggtggattcccaagaaaagtgtgcagcttgtgactttccactg
ctcaacaggcccttctatctcttcctgtgtggacacatgttccattatgactgcttgttc
caggaagtgacccctcagctgtcaacatataagcagaatcgtcttgaggagctgcagaag
aagctggcaacatccacacagtcatccaagtctcgccaccgcccagcgcccagggacgat
ggagacacttccagcctggggaaaggcaatgcgggcactagccgcgagcagataaaatca
gacattgatgacgtcattgcgtctgaatgcgtgtactgcggcgaactgatgatcaagacc
atcgacaagcctttcattgatccactgaaatttgaggaggagaaatccagctggctatga
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