Scomber scombrus (Atlantic mackerel): 133997290
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Entry
133997290 CDS
T10651
Symbol
prpf39
Name
(RefSeq) pre-mRNA-processing factor 39 isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
Spliceosome [BR:
ssco03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
133997290 (prpf39)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_16
TPR_10
ARM_TT21_5th
Motif
Other DBs
NCBI-GeneID:
133997290
NCBI-ProteinID:
XP_062292837
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Position
17:10940361..10947256
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AA seq
804 aa
AA seq
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MEDTGIHLSDDPISGMLNTESPAMESNGDGFLPDLPVLGQTADWSLDQVAPESLTNILPE
DSDASQDASGEQHQPDQQMNSTELGSVEKAVEHFQIASAQLFQEEEEEEQPQPQPPPPPP
PQPIEEDEQPTEHTAESAETPQDSQEMTIDTDATQGSTQDGTEEPQGTEDGMEIEEPSKE
TTQDPTVPSEPTEPELPSEFEKLFKGCEENPEDFNGWVYLLQYVEQENVLEAVRKSFDVF
FLRYPYCYGYWKKYADIEKKHENVQVAEEVYRRGLQAIPLSVDLWLHYLSYIKENSDPSD
PETEGRIRAAYEHAVLAAGTDFRSDRLWESFVNWETEQQKLANVTAIYDRILGIPTQLYS
QHFQRFKDHVQSNNPKHFLSEEEFVQLRLELSKASLLAMVCEDEETPAPQEDLPPGTDDL
TDPAKRVTEIENMRHKVIEVRQEVFNHNEHEVSKRWAFEEGIKRPYFHVKALEKTQLNNW
KEYLDFEIENGTPERVVVLFERCLVACALYEEFWTKYAKYLEGYSTDGVRHVYKKACTIH
MPKKPAIHLLWAAFEEQQGSVEEARGILKSLEAAVPSLAMVRLRRVSLERRHGNLEEAEA
LLREAMESAKNATETSFYAVKLARQLMKVQRSLSKARKVLLDAIEKDQASPKLYLNLLEL
EYSGDVTQNEVEILACFDRALKSQLPLESRLLFSQRKVEFLEDFGSDINVLVATYEEHQK
LQKESEPAKRKAENGYDSSQEPDAKRQRVDDTSSGAANATDMQANNSAYNYNWYQQQYPG
WGQNSWGQYGQYAQYNQYYPPPPT
NT seq
2415 nt
NT seq
+upstream
nt +downstream
nt
atggaagatactggcattcacctctcagacgaccccatttctggaatgctgaacactgaa
tcccctgccatggagagcaatggggatggcttccttcctgaccttcctgttttaggtcaa
actgctgactggtcactggaccaagtggctccagagtcgctcaccaacatcttgcccgag
gactcggatgcgtcccaagatgcctcgggggaacaacaccaacccgaccagcagatgaac
tccacagagctgggatctgtggagaaggcagtggaacactttcagatcgccagtgctcag
ctcttccaagaggaggaggaggaggagcagccgcagccgcagccgccgccgccgccacca
ccacagcccatagaggaggatgaacagcctacagaacacacagcagagtctgcagagact
ccgcaagacagccaggagatgacaatagatacagatgctacacagggtagcactcaagat
gggactgaggaaccacaggggacagaggacggcatggagatagaagaaccatccaaagag
acaacacaagaccccactgttccctcagagcccaccgagccagagctccccagcgagttt
gaaaaacttttcaaaggatgcgaggagaacccagaagactttaatggttgggtctacctg
ctgcaatatgtggagcaagagaatgttcttgaagctgtaagaaagtcctttgacgtattc
ttcctgcggtatccctactgctatggctactggaagaagtatgctgatatagagaaaaaa
catgaaaatgtacaggttgcagaagaggtgtacagaagaggcttgcaggccattcctctc
agtgttgacctgtggctgcactacctgtcatacatcaaagagaactcagacccaagtgac
ccagagacagagggacgcattcgagctgcctatgaacatgcagtgcttgcagctggtaca
gactttcgctcagaccgtctgtgggagtccttcgtcaactgggaaacagagcagcagaag
ctggctaatgtcactgccatctatgatcgcatcttgggcatcccaacccagctgtattcc
cagcacttccagaggttcaaagatcacgtgcagagcaacaaccctaagcacttcttatca
gaagaggagtttgtacagctgagactggagctctccaaagccagcctcttggccatggtc
tgtgaagatgaagagacgcctgctcctcaggaggatcttccacctggcacagatgacctt
acagaccctgctaagagagtgacagagatcgagaatatgcgccacaaggttatcgaggtc
cggcaggaagtgttcaaccacaatgaacatgaagtcagcaagcgttgggcctttgaggaa
gggattaagagaccatacttccatgtcaaagccttagagaagacccagctgaacaactgg
aaggagtacctggactttgagattgaaaatgggactccggagcgtgtggttgttcttttt
gaacgatgcctcgtcgcttgtgctctctatgaagagttttggaccaagtatgcaaaatat
ctagagggctacagcactgacggtgtgagacatgtctacaagaaggcgtgtaccatccat
atgcccaagaaaccagccatccacctgctgtgggcagctttcgaggagcagcagggcagc
gttgaggaggctcgtggcatcctgaagtccttggaggcagcagtcccaagtctggccatg
gtccgccttcggagggtcagtctggagcgtcgccatggtaacttagaggaagcagaggca
ctgttgagggaggccatggagtctgcaaagaatgctacagagacgtcattttatgctgtg
aagctggccaggcagctgatgaaggtccagaggagtctgagcaaagccaggaaggtgctg
ttggatgcgatagaaaaagaccaggcgagtccaaaactgtatctaaacctgcttgagctg
gaatacagtggagatgtgacgcagaacgaggtggagatcttggcttgtttcgaccgagcc
ttgaagagccagttgcctcttgaatcccgcctcctcttctcccaacgcaaagttgagttc
ctcgaggactttggcagcgacatcaacgtgctcgtggctacatacgaggaacaccagaaa
ctacagaaagaaagcgagccagcaaagagaaaagcggagaacgggtatgacagttctcag
gaacctgacgccaaaagacagcgcgtggatgacacttcctctggtgcagcaaacgcaaca
gacatgcaggcaaacaactctgcgtacaactataattggtaccagcaacaatatcccggt
tggggacagaactcctgggggcagtatggccaatatgcccagtataaccagtactatccc
cctcctcctacatga
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