Scomber scombrus (Atlantic mackerel): 133997400
Help
Entry
133997400 CDS
T10651
Symbol
casp8ap2
Name
(RefSeq) CASP8-associated protein 2
KO
K25593
CASP8-associated protein 2
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssco03019
]
133997400 (casp8ap2)
Messenger RNA biogenesis [BR:
ssco03019
]
Eukaryotic type
mRNA processing factors
3' end processing
U7-dependent histone pre-mRNA processing factors
133997400 (casp8ap2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Myb_DNA-binding_7
DUF416
INO80F
Motif
Other DBs
NCBI-GeneID:
133997400
NCBI-ProteinID:
XP_062292956
LinkDB
All DBs
Position
17:25005894..25017112
Genome browser
AA seq
1767 aa
AA seq
DB search
MEKIDINDETGFFAPNVSEDSVDIYDGLEVGHGSHAEKPTPTPPVKDSMDLYEEIVTEEL
QSQESSYNELKSRFQAAQNQIKELRRRLEQMELQNTGLNTENYRLKKNISALLRTARQEV
TRKDAEIQRLNQRSETGSHHQSRTNNLHQSSSHRTSSGSSTSRPTPPPPLWSSEDSKSRE
RRQDKPKMVTSDSEHGKAHSCKEAYSREHRKIKMSDGNSLRSDSKERKKSSSNQHADRHR
DSSKEQEGDKLSKDHQRKEERRREDEISRKHKRSTVPETSREHEKQRSKESDHAKGDVHS
KERPEKTHEALKRLSEDPNTANKSSTEENIPNRKLCFMETLNLTLSPIKKPSLPLDGTQD
ELTLVEKDLEESEGSQPDVEDMCVIDEVESSEIEGRLEAGAEPSDLNKTLTSENTPKKCD
EDFQEKDKIQTETPVADKQLKDHSSSALNHPLDTANNQMTAHLTPRSPESSSPKETDEDT
NNHVDKAKLVPSSKVDGSEQPEAADGLNETSRSTDERHTRNSLRKVNRGNSTDQSVTVSE
SVVLNSSVELSKSAVPQSLSLDLVTEDVVPSDGGGTPVAEDITDKAKPKPKSQHISSTIL
SVDCQQGLSPPASSRSSQKKDACHVQDGPKDADAVSSTISLESVPQEGLSLPEAIYVLTR
SNEDTNDSSGTAAEPSSSTGCIGVSKVSSTTEETALPEKHSDLAFTPKKSFSPGKSHERK
VEPSSSIPVFHDEDSMMRTLSSLKRMPDAISPLRSPIRITKRNHLHVHGKPGHVKSLQKD
FSNTPAEINSKKLDVNKENKYPGSPSQQEEQNLDKLPDLPSNLSDTELEEGEILSESDDA
TAVSPAPASKRAKLARPIRNKPKSLLKGKSEESCVTVKEMTEKAEASTPSPSSASKSRFK
TVCPAATKASFSTIEEVIETFKLVRSEIRKKYMKLHKTFPKKSFYGVMDNFQESFLEFVD
GAHFGQICSQAGKLKSELKKLVASVFSKVANNGIVKRIFEQQAVDLKQKLWDFVDVQVDY
LFKDIDTTLKSLCNPAKAHAGDKRGGGNEKVSRQPPVKKPHCQQKDVQSPPASLSQTKPG
AVVPYRTGLGSRGKDIRMTHVEKDSKADHRPPNNTQTLVDLRPHKIPSTPEKNHMASLVV
SQNVSLLDKTDFELLTEQQASSLTFNLVRDSQMGEIFKCLLQGSDLLETNAITADNATWS
LSTPRKDGERLISITTPSKFDSPSKLLSPTKFDTPSKLVATWSSISPRKMSSPQTKDQVP
LNPALFDESCLLEVPTESRTMLHSSLASQRCYSILAEDLAVSLTIPSPLKSDSHLSFLQP
TSMTIMSTPDSVLSAHISEDAMMDGEDASEQDIHLALDTDDSSCGSGSSEVAAIPFRFKP
DLPMQALVMEKSNDHFILKIRQATPVADVTLTADDSLSQTLTEEEQHDVATQGSPAKADL
SDESRKGTSPCNALSSKNNVPVLTQHSGMRQTATGADTYLTEDKSLTLTKDPFHKKEDTS
AQQSTSKGCFLAESPKTRSKRTASEKSSHNVAQRSDRSFGRISQATTRESLPLTTAESAS
PTQHKRSQQSPSKTLSKSQKTINPSKAAVLNSPAESPETNQRRKVSLSLVSDSERETEVS
ESERSFTILEDTSSTPEKDHSVHEKGRKRKRHPEKPKAKRSRKEEEEESVEEMVPDSKRD
DVNSKSSLSPLSPNSLYAKNIIKKKGEVVIAWTRDEDRAILMDLKIKGASRETFSALSEK
LDKPSEQIAHRFHQLMKLFKKQGKTEA
NT seq
5304 nt
NT seq
+upstream
nt +downstream
nt
atggagaaaattgacatcaatgatgaaactggtttctttgcgcccaatgtcagtgaagat
tctgtggatatctacgatgggctggaagtggggcacggcagccatgcagagaagcctacg
ccaactcctcctgtgaaggactccatggatctatatgaagaaatagtaacagaggagctg
cagagccaggagtcctcttacaatgagttgaagtccagattccaagcagctcaaaaccaa
atcaaagagttgcgtaggagactggagcagatggagttgcagaacacagggctgaacact
gagaactaccgcttgaaaaagaacatctctgcacttttacgaacagctagacaggaggtg
acacgaaaagatgctgaaattcagaggttgaaccaacggtcagagacaggttcccatcat
cagtctcgtacaaataacctgcatcaaagttcctcccatcggacctcctcaggcagctcc
accagtaggccaactcctccaccaccattatggtcctctgaagactcaaaaagtcgagaa
aggagacaagataaacccaaaatggtcacatcagactctgaacatggtaaagctcacagc
tgtaaagaggcctacagccgagagcatagaaaaatcaagatgagtgatggaaacagctta
aggtcagactcaaaggagcggaagaagtcttcttcaaatcaacatgctgaccgccacaga
gattcctccaaagagcaggaaggggataaactttcaaaggatcatcagaggaaggaagag
cggcgacgtgaagatgaaattagcaggaagcataagagaagcactgtgccagagacgagc
agagaacatgaaaaacagagatcaaaagaatcagaccatgctaaaggtgatgtccatagc
aaggaaagacctgagaaaacccacgaggccttaaaaagattatccgaagatccaaataca
gccaataaaagctcaacagaggaaaatattccaaacaggaaactgtgtttcatggaaacc
ttgaatctaaccctttcaccaattaagaagccatcattgcccctggatggcacccaagat
gagctcacactagtggagaaggatctagaagaatctgagggttcacagcctgatgttgaa
gacatgtgtgtcatcgatgaagtagagagcagtgagatagaaggcaggttggaagctgga
gcagagccttctgatctcaacaaaactctaacttctgaaaatacgcctaagaagtgtgat
gaagatttccaagaaaaggacaagatccagacagaaacacctgtggctgacaagcagctt
aaagaccattcatcctcagcacttaaccaccctcttgatactgcaaacaatcagatgact
gcacatctcacaccaagatcaccagagagtagttctccaaaagaaacagacgaggacaca
aacaaccatgtggataaagctaagttggtgccaagcagcaaggtagatggatctgaacaa
ccggaggctgctgacggtctcaatgaaacatctagaagcactgacgaacgacacacaaga
aattctttacggaaggtcaaccgtggaaatagtactgatcagtctgttactgtctcagaa
tctgttgtacttaattcaagtgtagaactttccaaaagtgcagtaccacagagcctctct
ctggatttagtcacagaagacgtagtcccatcagacggagggggaacacctgtcgctgaa
gacattacggacaaggccaaacccaaacccaaaagtcagcacatttcttccactatccta
tctgtagactgccagcaaggactgtctccacccgcttcatccagatcctcccaaaagaaa
gatgcttgtcacgtgcaagatggtcctaaagatgcagatgctgtatctagtacaataagc
ctggaatcagttccccaagaagggctgagtctacctgaggctatttacgtgctaacaagg
tcaaatgaagatactaatgacagcagtggcaccgcagctgagcctagctcttccaccggc
tgtatcggtgtgtcaaaagtcagtagtacaacagaggagacggcattgccagagaagcac
agcgacctcgcattcacacccaagaagagcttcagtcccgggaagagtcacgagaggaaa
gtcgagccttccagttcgataccggtatttcatgacgaggactccatgatgcgcacactg
agcagtctgaaaaggatgcctgatgccataagtccactgaggagccccatacggataacc
aagagaaatcatctccatgttcatggcaagcctggccatgtcaaaagtcttcaaaaagat
ttctccaatacacctgctgaaatcaactcaaagaagttggacgtaaacaaagaaaacaaa
tacccaggttccccctcacaacaagaagagcaaaacctggacaagctacccgacctgcct
tcaaatctctctgacactgagctggaagaaggagaaattttaagtgaaagcgatgatgcg
actgcggtttctccagctcctgctagcaagagggcaaagttagcacgaccgatcagaaat
aaacccaagtccctgttaaaggggaaatctgaagagagttgtgttactgttaaagaaatg
actgaaaaggctgaagcatccacgccaagtccatctagcgccagcaagagtcgttttaaa
acggtttgccctgcagcgaccaaagcttctttttccactatagaagaagtaattgagaca
tttaagttggttcgctctgaaatccgcaaaaagtacatgaagcttcataaaaccttccct
aagaagagcttctatggcgtgatggataattttcaggagtcttttttagaattcgtggac
ggtgcccatttcggtcagatatgcagtcaggcaggcaagcttaaatccgagctgaagaag
ctggtcgcttctgtcttcagcaaagtagcaaataatggcattgtgaaacgcatctttgaa
cagcaggcagtggatctgaagcagaagttgtgggactttgtagatgttcaagttgactat
ttgttcaaggatattgacacaacgctgaagagcctttgcaatccagccaaagctcatgct
ggggacaagaggggcggcggaaacgagaaagtgtcgagacagcctcctgtgaagaagcca
cactgtcaacagaaggatgtacagtctcctccagccagcctgagtcaaaccaagcctggt
gctgttgtgccttacagaacaggcctcggaagcagaggcaaagacattagaatgactcat
gtagagaaagacagtaaagctgaccatcgtccaccaaataatacacaaacattggttgac
ctacgtccacataaaattccttcaactccagagaaaaaccacatggcttcattggtcgtc
tctcaaaatgtctctctgcttgacaaaaccgactttgagctgctcaccgaacagcaagct
tccagtttaacgttcaacctggtgagagactctcaaatgggagaaatcttcaagtgcctc
ctgcaaggatctgacttgctagaaaccaatgcaatcactgcagacaacgccacctggtcc
ctcagtactccaaggaaagatggagaaagactcattagcataaccactccatctaaattt
gactctccatctaaactgctttccccaaccaaattcgacactccctctaaactcgtcgcc
acatggtcgagcatttcacctcgcaagatgtcgtccccacagaccaaagaccaggtcccg
ctgaacccggctttatttgatgaaagctgcttgttagaggtgccaacagagagtcggaca
atgctgcactccagcctggcttcacagaggtgttactccattctagccgaagacctggca
gtctccctcaccataccgtcacccctcaagtctgacagccacctcagcttcctacagccg
actagcatgaccattatgtccaccccagacagcgtcctgagcgcgcacataagcgaggac
gctatgatggacggcgaagacgcttcggagcaggacatccacctcgccctggacacggat
gactccagctgtgggtccggcagctcagaagttgccgccatacctttcaggttcaagcca
gacttgcccatgcaggcgctggtgatggagaaatccaacgatcatttcatcctgaagatc
cgtcaggcgaccccggttgcagatgtcaccctcactgccgacgacagcttaagtcaaaca
ctaacagaagaagagcagcatgacgtcgcaacacagggaagtccagcaaaagctgatttg
tcagatgagtcgcgaaaaggtaccagtccttgcaatgctttgtcctcaaagaacaatgtc
cctgtcctcacccagcactctgggatgcgccagactgccactggtgccgatacatatctc
actgaagataaaagtttaacactaactaaggatccattccacaaaaaagaagatacgtca
gctcaacaaagtacctcaaaaggctgttttttggctgaatcgccgaaaactcggtctaaa
agaactgcttcagagaagagttcgcacaacgttgctcaacgctctgatcgttcatttggg
cggatcagccaggcaaccaccagagaaagtcttccactcacaactgctgagagtgcaagt
ccaacacagcacaaacgtagtcaacaaagtccctcaaaaactttgtccaagtcacaaaaa
acgatcaatccctccaaagctgctgtgttaaatagtcctgctgaaagccccgaaacaaat
caaaggaggaaagtgtcactgtcacttgtttcagactcagagagagaaacagaggtgtca
gagtcggagagaagtttcaccattctggaggacacaagcagcacgcccgagaaagaccac
agcgttcacgagaaaggacgaaaacggaagaggcacccagagaaaccaaaagccaagcgg
tccagaaaggaggaagaggaggagagtgtggaagagatggtgcctgactcaaagagagat
gatgtcaactccaaatcctcactttcacctttgtcccccaacagtctttatgccaagaat
atcatcaagaaaaaaggggaagtggtgatagcgtggaccagagatgaagatcgagctatt
cttatggacctgaaaataaaaggtgcttcacgtgaaactttctctgccctctctgaaaag
ctggataaaccatcagagcagatcgctcacagatttcaccagctcatgaagctttttaag
aagcaggggaagacggaggcgtga
DBGET
integrated database retrieval system
