Scomber scombrus (Atlantic mackerel): 133997450
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Entry
133997450 CDS
T10651
Symbol
arid1b
Name
(RefSeq) AT-rich interactive domain-containing protein 1B isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
133997450 (arid1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ssco03000
]
133997450 (arid1b)
03021 Transcription machinery [BR:
ssco03021
]
133997450 (arid1b)
03036 Chromosome and associated proteins [BR:
ssco03036
]
133997450 (arid1b)
Transcription factors [BR:
ssco03000
]
Eukaryotic type
Helix-turn-helix
ARID
133997450 (arid1b)
Transcription machinery [BR:
ssco03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
133997450 (arid1b)
Chromosome and associated proteins [BR:
ssco03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
133997450 (arid1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
133997450
NCBI-ProteinID:
XP_062293014
LinkDB
All DBs
Position
17:complement(5207526..5259204)
Genome browser
AA seq
2051 aa
AA seq
DB search
MDASLGSVTNTTTNSSSNPPPCGTSSEFNHYYGNGRRGGPCFDQHGGQQSAGTGVKPAAH
SAHSTMDQVQNSHEGYNNNNNNSSSPYNNNYPNYRPGYGGSSSGGSGYGGMMSPARQGSN
LLGLAASSSAKAGMTAANTPVGAGGGGDGGGGFQRFQQHPSGATPTLNQLLTSPSPMMRG
YGGGYPEYSNNNNNTPQQQQQQQQQSIGGSSVAAHGWGGQHRNHPAMNPGNNGQGGGRSQ
VPPMDPMAMKRSQLYAMSNNPYSQQQAAPYPGQPYGSPSPHRYPMGMPGRGQMALGGMQY
PQQQMGSQYAQQQNVGGYCQPGQPPYFSPPQQQPAAPSQPPYMQPRPLPQQEVPQEAYGG
RGQSAAMTPGKPNHEEMSLSQQERPSSLPGADAVAMATCREENGSVAGRERDLSGSIDDL
PTGTEAAVSSGGLGSAGAQSDQGTPTRSPFSPHVSPRLLPLARTGPSPSPSPSPAGSRSG
PLSPASSGPGSQLTPQVSGPGSDVGPHSSQSAMTQDRGFPPSMQRSTPGPQFGSQQSAPP
MSPHPAPAGPMHHGSYQQGGPSYSQYGPPGNFPRPPHYGGAPSANYSGPGPGPGLANSLG
LNASSPMHGQGPSTPAGRGPGPGAGGRPFPAGGNAMAPTSPGMPQPAGQGMGPPGPNGNR
KPLEVIPNAGPIANSSSNAAAAAAAQGRPPFSHSPVYHNQSWPGGRPALSPTPHPSHPPH
PQHHHPPPPPPTPPHHPQKVSNSLPHPAGQTPPEHYGQGSFPGMAPMGGMGPGGPGGPGG
PFIQQPGSNSGRMTPQGLPYNAPSSGPMMMPADGMGVHPDAKQRVELNKEVVAPPADPPK
PKKPSAATMTNEKITRLYDMGSEPERRAWVDRFLSFMEERGTPVPNLPAVGKKPLDLCRL
YLCVREIGGLAMVNKNKKWRELSSQLNVGTSSSAASSLKKQYIQYLFTYECKVERGEEPP
PEGTGPAADTKKRPSPQTKVQPPSPANSGSLQGPNTPQSSSSSLAEAPIDMKPLTPAPTP
HSQMGPQPVNRNMVGVSIQDPFSEGNDPAFHKRGPGPGGAPYQQGGGPTDPSMRMQYDAN
KDPFGGQRKGPGPGEAFGPGQMPSGAMQDMYPRGPPSGPLTGMGPRPQFPYGPGYERRPD
HAMGPEGGVQNSMGPSGNEAGMYPANRYPPHQRHGHDGYGQQFPHNMAYGSHQPLYPQQQ
GYKRPMEAMYPPAKRHEGEAFGVQQFSSQQPEMFGPYGGAGGGYMGPERRPVQGQYPYPY
NRERQGPPQLAMMGSGAPAVSGGPGEGPQGNMWHPRTEMGFPFNRQGQGPPFPGMGRGED
QEGRAPQDGQWAPSHPGQRQLPFPSHSSSSSSSPSMPPLPSRQPPSSFQAAPIIPNHVTR
SLSPSFFPRPMGGSLSPNSAPYMPSIKKPGPAPGQGPLPLHRDVSFPPGCTEATPPKLKP
RRRLTAKDTGTPEAWRVMMSLKSGLLAESTWALDTINILLYDDSTVGSFSLTQLPGFLEI
IVEFYRRCLIQIFGILEEYEVGSEGQGTLLGPLPELLKEEEVPTESNSQSQEEQRIARRS
VEETAKLLLSAAPNISGEETKNNNAAAVVKEEPAEPRPQQASKHDKLPIKVEETGEEWQQ
VEERWAELSRRNGFISGLLHWKAGGGDSTTHIQTHLEPRARNSAPPDPLEWEGRGRGGGG
GEQERSQEREGGADGQEEEGGEEQNQQECRGQRSPVAQSPISQLEDEPRCWDEAPLSTAE
NWQDSLAKRCVCIANIVRGLSFVPGNDTDMSQHPGLILILGRLVLLHHHHPRRKRTLPTY
QREEEQGLACSRDEWWWDCLAALRENTLVTLANIAGQLDLSQYTESICLPILDGLLHWMV
CPSAEAQDPFTLAGNFSSLTPQRLVLESLCKLSIQDCNVDLLLATPPFRRQQKIFSTLVR
LVGERKSQVCREMAVAILSNLAQGDTAAARTIALLKGSVATLIGFLEDSVAMAQYQQNPH
SLMHAATPPEPPSVNMMCHAAKALLAMAKVEENRAEFVLYESRLLDISLSAALSSAVAAI
MCEVLFKIGRS
NT seq
6156 nt
NT seq
+upstream
nt +downstream
nt
atggatgccagcctgggatcagtcaccaacaccaccaccaacagcagcagcaaccctcct
ccatgtgggaccagctccgagtttaatcattattatgggaatggaagaagaggagggcct
tgctttgatcaacatggcggacaacaaagcgcagggactggggtaaaaccggcggcgcac
tcggcacacagcaccatggatcaggttcaaaactcacacgaaggctataacaacaacaac
aacaacagcagcagcccgtacaacaacaactacccaaactatcgccctggctacggcggc
agcagcagcggtggcagcggctatggaggaatgatgagccccgcacggcaggggagtaac
ctgctcggcctggccgcctctagtagcgccaaagccggcatgactgctgctaacaccccg
gtcggagctggaggtggaggtgatggaggcggaggatttcagcgatttcagcagcaccca
tcaggagctacaccgactttaaatcaactattaacgtctccgagtccgatgatgcgtggt
tatggaggtggatatcctgaatatagtaataataataataatactccgcagcaacagcag
cagcaacagcagcagagcatcggtggctcgtctgtagcggctcacggttggggaggacaa
caccgaaaccaccctgctatgaacccgggaaacaacgggcagggcggcggcagatctcag
gtgccgcccatggacccgatggcgatgaagcgctcacagctctacgccatgagcaacaac
ccatactcccagcaacaggcggcgccgtaccctggccagccctacggctccccgtctcca
cacagatacccgatgggcatgccgggtagagggcagatggcgttgggagggatgcagtac
cctcagcagcagatgggttctcagtacgctcagcagcagaacgtgggcggctactgtcag
ccgggtcagccgccatatttcagccccccacagcagcagcccgccgcccccagccagcca
ccgtacatgcagcctcgtccactgccgcagcaggaggtgccacaggaggcgtacgggggg
cgtggccagtccgctgcaatgactcctgggaaaccaaaccacgaggagatgagtctgagc
cagcaggagaggccatccagtctgccgggtgctgatgcagttgccatggcgacatgcaga
gaggaaaatggctcggttgcaggaagagagagagatctgtccggctccatcgatgacttg
ccgacgggcaccgaggcggcggtgagttcaggtggattaggatctgccggcgctcagagc
gaccagggaacaccgacccgctctcccttctccccccacgtctcgccccgactcctcccg
ctcgccagaaccggaccctccccctccccttcgccatctcccgccgggtcaagatccgga
ccactctcacccgccagcagcggaccaggatctcagctgacccctcaggtctccggtcca
ggatcagatgttggtcctcattcctcccagtctgccatgactcaggacagaggtttccct
ccttccatgcagcgtagcacccctgggccccagtttggctcccagcagtcagcaccgccc
atgtcccctcacccagcgcctgcgggccccatgcatcacggctcctaccagcagggagga
ccctcttacagccagtatggacccccaggtaacttcccccggcccccccactacggcggg
gctcccagtgccaactacagcggccccggtccaggacccggcctcgccaacagccttgga
ttgaacgccagcagtcccatgcacggtcagggtccctccactccggcaggtcgcggcccc
gggcccggcgcagggggcaggccttttccagccggaggtaacgccatggcccccacctcc
cccggcatgccacagcccgctgggcagggcatgggacctccgggccccaacggcaaccgc
aaaccactggaggttattcccaacgcggggccgattgccaactcttcctccaacgctgct
gctgctgctgctgctcagggcaggcctcccttctctcactcccccgtctaccacaaccag
tcctggcccgggggtcgacctgccctctctcctacccctcacccctctcaccctcctcac
cctcagcaccatcatcctcctcctcctcctcctactcctcctcaccaccctcagaaggtc
tccaattctctgccccatcccgccgggcagacccccccagagcattatgggcagggcagc
ttccctggcatggcaccaatgggaggaatgggacccggaggccctggaggtcctggaggt
ccgttcatccagcaaccagggagcaactctggcaggatgacgcctcagggactcccctac
aacgccccatcctcaggcccgatgatgatgccagcggatgggatgggcgttcatcctgac
gccaagcagagggtggagctaaacaaagaggtcgtcgcccctcctgctgatccacccaaa
cccaagaagcccagcgcggccaccatgaccaacgagaagatcactcggctctacgacatg
ggctcggagccggagcgccgggcgtgggtcgaccgcttcctgtccttcatggaggagagg
gggacgcccgtaccaaacctccccgccgtcggcaagaagccgctggacctctgcagactc
tacctgtgtgtcagagagatcggaggactggccatggtgaataagaacaagaagtggagg
gagttgtcgtcccagttgaacgtggggacgtccagcagcgccgccagctctctgaagaag
cagtacatccagtacctgttcacctacgagtgtaaggtggagcgaggggaggagcctcca
cccgagggcacgggacccgcagcagacaccaagaaacgcccgtcaccccagaccaaagtc
caacctccctccccagccaattcgggttccctgcagggccccaacacccctcagtccagc
agcagctccctggccgaggcccccatagacatgaagcccctgaccccggcccccactccg
cacagccagatgggcccccagcctgtcaacaggaacatggtcggagtgagcatccaggac
ccgttctctgaaggcaacgatccagccttccacaagcgaggcccgggacccggcggcgcc
ccctaccagcagggaggaggtcctacagacccctccatgaggatgcagtacgatgccaac
aaagacccatttggaggacagaggaaaggtccaggacccggcgaggccttcggtcctgga
cagatgcccagcggtgccatgcaggacatgtacccccgcgggccaccctcggggcccctg
acagggatgggccctcggccacagttcccctacggccccggttacgagcgaaggccggac
catgcgatggggccagagggaggagttcagaacagcatgggcccctctggaaatgaagcc
ggcatgtaccccgccaacagataccccccccaccagagacacggacacgacggctacggg
caacagtttcctcacaacatggcctacggttcccatcagcccctgtaccctcagcagcag
ggctacaagcgtccgatggaggcgatgtatccgcccgctaagcgtcatgagggcgaggcg
ttcggggtgcagcagttcagctcccagcagcccgagatgttcggcccctacgggggtgca
ggagggggctacatgggccccgagcggcggccggtccagggccagtacccgtatccgtac
aaccgcgagcgccagggccccccgcagctcgccatgatgggctcaggagctccggcggtg
tctgggggtcccggtgaggggccgcagggcaacatgtggcaccccaggacagagatgggc
ttcccgttcaaccggcagggccaggggcccccgttccccggcatgggccgaggggaagac
caggagggcagggcaccccaggacggccagtgggcccccagccacccagggcagcgccag
ctgccgttcccttcccactcctcttcctcctcctcttccccctccatgccccccctaccc
tccagacagcccccctcctccttccaggccgcacccatcatccctaaccatgtgacccgc
tctctcagcccctcattcttcccgcggcccatgggtggctctctgtcccccaacagtgcc
ccctacatgccctccatcaagaagcccggcccagcacccggtcagggacccctccccctc
cacagagacgtcagcttcccccccggctgcaccgaagccacgcctccaaaactgaagcca
cgacgccgactcaccgccaaggacacgggaaccccggaggcgtggcgggtgatgatgtca
ctgaagtccggcttattagcagagagcacctgggctctggacaccatcaacatcctgctg
tatgacgacagcaccgtgggctccttcagcctcacacagctgcctggtttcctcgagatc
atcgtggagttttaccgtcgctgcctcatccagatcttcggcatcctggaggagtatgag
gtggggtcagagggtcagggcaccctgttgggacccctcccagaacttctcaaagaggag
gaggtgccaactgagtctaacagccaatcacaggaggagcagaggatagcgaggaggtcg
gtggaggagacggcgaagcttcttctttcagctgcgcccaacatcagcggcgaggagacg
aagaacaacaatgccgctgccgtcgtcaaggaggagccggcagagccccgcccccaacag
gccagcaagcacgacaagctgccaatcaaggtggaggagacgggggaggagtggcagcag
gtggaggagcgctgggccgagctcagccgccgcaacggcttcatcagcggcctcctgcac
tggaaggccggaggaggagactccaccactcacatccagacgcacctggagccccgagca
agaaactccgcccccccagacccactggagtgggaggggagagggagagggggaggagga
ggagaacaggaaaggagtcaggagagggagggaggagctgatggacaggaggaggaggga
ggggaggagcagaaccaacaagagtgcagaggtcagaggtcaccggtggctcagagtccc
atcagccagctggaggacgagccgcgctgctgggacgaggctccgctctccaccgccgag
aactggcaggactccctcgccaaacgctgcgtctgcatcgccaacattgtgcgcggcctc
tccttcgtccccggcaacgacaccgacatgtcgcagcacccgggtctgatcctgatcctg
ggccgtctggttctgctgcaccaccaccacccccgcaggaaacggacgctgcccacctac
cagcgggaggaggagcaagggttggcgtgcagccgggacgagtggtggtgggactgcctg
gcggcgctcagggagaacacgctggtgacgctcgccaacatcgccggccagctggacctg
tcgcagtacaccgagagcatctgcctgccgatcctggacggactgctgcactggatggtg
tgcccgtccgccgaggcccaggacccgttcaccttggcgggcaacttctcctcgctcacg
ccgcagcggctggtgctggagtctctgtgcaagctgagcatccaggactgcaacgtggac
ctgctgctcgccacgccgccgttccgccgccagcagaagatcttctccacgctggtgcgg
ctcgtcggcgagaggaagagccaggtgtgccgcgagatggcggtggccatcctgtccaac
ctggcgcagggcgacaccgcggcggcccggaccatcgcgctgctgaagggcagcgtggcg
actctgatcggcttcctggaggacagcgtcgccatggcgcagtaccagcagaacccacat
agcctgatgcacgccgccacgccgcccgagccgccaagcgtcaacatgatgtgtcacgcc
gccaaagcgctgctggcgatggcgaaggtggaggagaaccgggcggagttcgttctgtac
gagagccggctgctggacatctcgctgtcggccgcgctcagctccgcggtggcggccatc
atgtgtgaagtactctttaaaatcggccgctcgtga
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integrated database retrieval system
