Scomber scombrus (Atlantic mackerel): 133997501
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Entry
133997501 CDS
T10651
Symbol
exosc1
Name
(RefSeq) exosome complex component CSL4
KO
K07573
exosome complex component CSL4
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133997501 (exosc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssco03019
]
133997501 (exosc1)
Messenger RNA biogenesis [BR:
ssco03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
133997501 (exosc1)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
133997501 (exosc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
RRP4_S1
Motif
Other DBs
NCBI-GeneID:
133997501
NCBI-ProteinID:
XP_062293093
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Position
2:complement(10593764..10598284)
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AA seq
194 aa
AA seq
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MSPMKLCVPGDKLCSVEDCIPGTGVYLRHGYIYSSLAGYVLRKNEGEELPVISVVRETEA
QLLPDVGAIVTCKVTSINPRFAKVHILYVGSTPLKDRFRGTIRKEDVRATEKDKVETYKS
FRPGDIVLAKVISLGDVQSNYLLTTAENELGVVVAHSEAGAQMIPISWCEMQCPRTHSKE
FRKVARVQPEYLQA
NT seq
585 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcccatgaagctgtgtgttccaggtgacaaactatgcagtgtagaagactgtata
cccggcacaggagtgtacctgcggcacggctacatatactcctcactagcaggctacgtg
ctgaggaaaaacgagggagaggagttaccagtaatatcagtggtgagggaaacagaagca
caactactaccagatgtaggagcaatagtcacctgtaaggtgaccagcatcaacccaagg
ttcgccaaggtccacatcctttatgtaggctccacaccgctcaaggaccgcttcagaggc
accatcagaaaagaagatgtgcgagcgacagagaaagacaaggtggagacctacaaaagt
ttcagaccaggtgacatcgtcctagcgaaagtgatctctctcggtgacgtgcagtcgaac
tacctgttgactacagcagagaatgaactgggggtggtggtggcacacagtgaagcaggt
gcccagatgatccccatcagctggtgtgagatgcagtgtcctcgaacacattccaaagag
ttccgcaaagtggcacgagtgcagccggagtatctacaggcatga
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