Scomber scombrus (Atlantic mackerel): 133997531
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Entry
133997531 CDS
T10651
Symbol
stxbp5a
Name
(RefSeq) syntaxin-binding protein 5a isoform X1
KO
K08518
syntaxin-binding protein 5
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ssco04131
]
133997531 (stxbp5a)
Membrane trafficking [BR:
ssco04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
133997531 (stxbp5a)
SNARE
VAMP, Ykt6, Sec22 (R)
Tomosyn
133997531 (stxbp5a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LLGL
Beta-prop_EML_2
WD40_CDC20-Fz
WDR55
WD40_WDHD1_1st
WD40
ANAPC4_WD40
Beta-prop_RIG_2nd
WD40_Prp19
Beta-prop_IFT140_1st
Beta-prop_HPS5
Beta-prop_WDR19_1st
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
Lgl_C
EIF3I
Beta-prop_NUP159_NUP214
Beta-prop_Vps41
CFAP43_N
Synaptobrevin
Beta-prop_VPS8
VPS8_N
WD40_like
Motif
Other DBs
NCBI-GeneID:
133997531
NCBI-ProteinID:
XP_062293132
LinkDB
All DBs
Position
17:complement(16327022..16430472)
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AA seq
1141 aa
AA seq
DB search
MKKFNIRKVLDGLKEASSSTPSVHVGPQENHLIQETLQSDHFQLCKTVRHGFPYQPSSMA
FDPVQKILAIGTQRGALRLFGRPGVECYCQHESGAAVIQLQFLINEGALVSALADDTVHL
WNLRQKRPAILHSLKFSKERITFCHLPFQSKWLYIGTERGNIHIVNVESFMLSGYVIMWN
KAIELSSKAHPGPVVHISDNPMDEGKLIIGFESGIVVLWDLKSKKADYRYTYDEAIHSVA
WHHEGKQFICSHSDGTLTIWNIRGQGKPIQTITPHGKQPKDGKKPEPCKPILKVEYKTTR
NGEPFIILSGGLSYDTVGRRPCLTVMHGKSTAVLEMDYPIVDFLTLCETPYPNDFQEPYA
VVVLLEKDLVVIDLAQNGYPIFENPYPLTIHESPVTCCEYFADCPVDLIPALYSVGSRQK
RQGYSKKEWPISGGNWGQGTQSYPEIIITGHADGTVKFWDASAITLQVLYKLKTAKVFDR
NRSKEDKGSMEVSDEDPFAIQIMAWCPESRMLCVAGVSANVIIYRFSKLEVTTEVVQLLE
VRMQYELNDMESPDGVGGEQTSALPTPGASPQTSGPPSHPSTSSNNSDGGNMPCLKVRST
PLKQSPGYQVDLVVQLVWVSGEPPQQITTLALNSSYGLVVFGNSNGLAVVDYIQKTVVLN
LGTVELYGSNDPYQRQPRSPRKTRQPSGGLCDINEGSATSEDRCKSPTSVLMSNSNLQQF
YNGGGRGAKMSRKLSLPTELKPDLVLLSVCPPRGANPLDHRDNSFSRSRSSSVTSIDKEA
KEAITSFHFSETFARKGDSTLTPCLYVGTSLGTVLTLAITLPPAGEQRQLQPVIISPTGM
LVRLKGSHLQMAFLDTTGSLVPPAFEPWYEPNVTADGEEREKVRKRRPVSVSPSTSQDLN
ENQYAVVCSDKQAKVISLPSQTCIYKHSITETSFILRADVVQMSQGVSLACFCANGHIMT
LSLPGLRPLMDVNYLPLTDMRIARTFCFTNLGQAMYLCSPTEIQRLTYSQDTCENLQEML
GELFTPVETPEAPNRGFFKGLFGGGAQSLDREELFGEVAAGKASRSLAQHIPGPGGIEGM
KGAASGVVGDLARARIALDERGQKLGELDERTAAMMNSADSFSKHAHEMMLKCKDKKWYQ
F
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
atgaagaagttcaacatcaggaaggtgctggacggcttgaaggaggcgtcctcctccacc
ccgtctgtccatgtggggccacaggagaaccatctgatccaggagacccttcagtccgac
catttccagctctgcaagactgtccgtcatggcttcccatatcagccatcatccatggct
ttcgacccggtgcagaagatactggccatcggcacccagagaggagctctcagattgttt
ggtcgtccaggtgtcgagtgttactgtcaacatgagagtggagcggccgtcatccagctt
cagtttctcatcaacgagggagcacttgtgagtgctttggctgatgacactgtccacctg
tggaacctgaggcagaagagaccagccatcctccattccctcaagttcagcaaagagaga
ataactttctgccacctgcccttccagagtaaatggttgtacatcggcacagaacgaggg
aacatccacatcgtcaacgtggagtcctttatgctctcaggctacgtcatcatgtggaac
aaagccattgaactgtcgtccaaggctcaccctggaccagttgtccacataagtgacaac
cctatggacgagggaaagcttataattggatttgagtctgggatcgtggtcctgtgggat
ctgaaatcaaagaaggccgactatcgctacacttacgatgaggcgatccactcagttgcc
tggcatcacgagggcaagcagttcatttgcagtcactcagatggaaccctgaccatatgg
aacatcagagggcagggcaagcccatacagacaatcacccctcacggaaaacagcccaag
gacggaaagaagccagagccttgcaaacccattctcaaagtggaatacaaaaccactaga
aacggggaacccttcataatcctttctggtggtctatcctacgacacggtgggcaggcgg
ccctgtcttacagtaatgcacgggaagagtactgctgtgctggagatggactaccctata
gtagacttcctcacactctgtgagacaccataccctaacgattttcaggaaccttatgct
gtggtggtccttctagaaaaggatttagtggtgatcgaccttgcacaaaatggttacccc
atattcgaaaacccctatcctctgactatccacgagtctcctgtgacctgctgcgagtac
tttgccgactgccctgtggacctcatacctgcactttactctgttggctcgcggcagaaa
cgacagggctacagcaaaaaggaatggcctattagtggtggaaactggggtcaaggcaca
cagagctacccagagatcatcatcactgggcatgctgatggaactgtgaagttctgggat
gcctctgcaataacgctccaggtgctctacaagctcaaaacagccaaggtgtttgacaga
aaccggtccaaggaggacaagggcagcatggaggtgtcagatgaagacccttttgccatc
cagatcatggcctggtgccctgagagcaggatgctgtgtgtggctggggtgtcagctaat
gttatcatctaccgtttcagcaagctggaagtaactactgaggtggtgcagttactagag
gtgcgaatgcagtatgaactgaatgacatggagtctccagacggtgttgggggtgaacag
acatcagcgcttcccacccctggtgcctcccctcagacgagtggcccaccatcgcacccc
tccaccagcagcaacaactctgacggaggcaacatgccttgcctcaaagtgcgcagcact
cctctgaagcagtctccaggttaccaggtagatttggtggtccagttagtgtgggtgagt
ggagagccccctcagcagatcacaactctggcgctcaattcctcctacggccttgtggta
ttcggcaacagtaatggtctggccgtggtggactatatccagaagacagttgtgctcaac
ttggggacggtcgagctgtacggctccaatgacccctaccagagacagccccgctcacca
agaaagacacgacagccctctggaggtctgtgcgacatcaatgagggctcagcaacatca
gaggaccgctgcaagtctcctacttcagtgttgatgtcaaacagcaatctacagcaattc
tacaatggcggtggtagaggagcaaagatgtcacggaaattaagcttgcctactgagcta
aagccagacttggtcctcctgtctgtatgcccgccgcggggtgccaacccattagaccac
cgggacaattctttcagccgctcgcgctcctccagtgtcaccagcatcgacaaggaagct
aaagaagccatcacttccttccacttcagtgagaccttcgcccggaagggggacagcact
ttgacaccctgcctgtatgtgggcacctccttgggcaccgtgctcactctggctatcaca
ttaccacctgctggtgaacaacggcagctgcagccagttatcatttctcctacaggcatg
ttggtacgcctgaaaggcagccacctgcagatggctttcttggacaccacaggttccctg
gtgccccctgcgtttgaaccttggtatgaacccaatgttacagcagatggtgaagaaaga
gagaaggtccgcaaacgccggcccgtctcagtttccccttcaacctcccaggacctcaat
gagaaccagtatgccgtggtgtgttcagataaacaggccaaagtcatttccctgccctcc
cagacctgcatctataaacatagtatcacagagacttccttcatcctgcgggcagatgtg
gtgcagatgagccaaggcgtgagcctggcgtgcttctgtgctaatggccacatcatgacc
ctcagtttgcctggactgagaccgctcatggatgtaaactacctgcctttgacagacatg
cggatagcaaggacgttctgcttcaccaacttgggtcaggccatgtatctctgctccccc
actgagatccagaggctcacttacagtcaggacacctgtgagaacctgcaggagatgcta
ggtgaattatttacaccagtggagacaccggaggcacccaacagaggtttcttcaagggt
ctctttgggggaggagcacagtcactggatagagaggagctatttggagaggtagcagct
ggaaaggcatcccgaagcctggcccagcacatcccaggcccgggtggcattgagggtatg
aagggggcagcctctggtgtggtgggagatctggcacgcgcccggatagcacttgatgaa
agaggccagaaactgggtgagctggatgagaggacagctgcgatgatgaacagcgcagat
tccttttccaaacacgcccatgagatgatgctgaagtgcaaagacaaaaaatggtaccag
ttctga
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integrated database retrieval system
