Scomber scombrus (Atlantic mackerel): 133997542
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Entry
133997542 CDS
T10651
Symbol
esr1
Name
(RefSeq) estrogen receptor isoform X1
KO
K08550
estrogen receptor alpha
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04081
Hormone signaling
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04081 Hormone signaling
133997542 (esr1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ssco03000
]
133997542 (esr1)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
ssco03310
]
133997542 (esr1)
Transcription factors [BR:
ssco03000
]
Eukaryotic type
Zinc finger
Cys4 estrogen receptor-like
133997542 (esr1)
Nuclear receptors [BR:
ssco03310
]
3. Estrogen like
3A. Estrogen receptor
133997542 (esr1)
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Gene cluster
GFIT
Motif
Pfam:
Oest_recep
zf-C4
Hormone_recep
Serglycin
zf-C17orf113
Motif
Other DBs
NCBI-GeneID:
133997542
NCBI-ProteinID:
XP_062293159
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Position
17:16937001..16948901
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AA seq
634 aa
AA seq
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MCKRQSPAQNRQPCGPVVRPRISLAISELETLSSPRLSPPPRAPLSDMYPEESRGSGGVA
TVDFLEGTYDYATPTPAPTPHYSHPTTGYYSAPLDSHGPPSDGSLQSLGSGPTSPLVFVP
SSPRLSPFMHPPSHHYLETSSTPIYRSSGPSSQQPVSREDQCGVSDKSYVVGESGAGAVG
VEMAKETRFCAVCSDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDRNRRK
SCQACRLRKCYEVGMMKGGVRKDRGRVLRRDKRWAGARDKSTKELEHRKVPPQDGRKRSS
SSASGGKSSVAAIPPDQLLLLLQGAEPPMLCSRQTLGRPYTEVTMMTLLTSMADKELVHM
IAWAKKLPGFLQLSLHDQVQLLESSWLEVLMMGLVWRSIHCPGKLNFAQDLILDRNEGDC
VEGMSEIFDMLLATTSRFRMLKLRPEEFVCLKAIILLNSGAFAFCTSTMEPLHDSAAVQN
MLDTITDALIHCINQSGGSVQQQSRRQAQLLLLLSHVRHMSNKGMEHLYSMKCKNKVPLY
DLLLEMLDAQRLQHPIRPSQFWSQADKEPPSTTSINNNNNNNNNNSSSGSGSGSGSSAGS
SSGIRGTHESPSRPPSGLGVLQYGGSRSDCTNIL
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgtgtaagaggcagagcccggcgcagaacaggcagccttgcggaccagtagtcagaccc
aggatcagcctagccatctcagagctggagaccctctcttcaccacgtctctctcctcca
ccgcgtgcccccctcagtgacatgtaccccgaagagagccgggggtctggaggggtagcc
actgtggacttcttggaggggacatacgactatgccacccccacccctgccccgactcct
cattacagccaccccaccactggctactactctgctcctctggattcccacggaccaccc
tcagatggcagccttcagtctctgggcagtggccccactagtcctcttgtgtttgtgccc
tccagcccacgtctcagccccttcatgcacccgcccagccatcactatctggaaaccagt
tcaacacccatctacaggtccagtgggccatccagtcagcagccagtatccagagaggac
cagtgcggcgtcagtgacaagtcatacgttgtgggggagtcaggagcaggagccgtgggg
gttgagatggccaaagagacgcgtttctgtgccgtatgcagtgattatgcctcagggtac
cactatggggtgtggtcctgtgaaggctgcaaagccttcttcaagcggagcatccagggt
cacaatgactatatgtgcccagcaaccaatcagtgtactattgacaggaatcggagaaaa
agctgccaggcttgccgtcttaggaagtgttatgaagtgggaatgatgaaaggaggtgtg
cgcaaagatcgtggtcgtgttttgcggcgggataaacgatgggctggtgccagagacaag
tccaccaaggagctggagcacagaaaagtccccccccaagacgggaggaaacgaagcagc
agcagcgcttccggaggaaaatcatcagtagctgccattcctcctgaccagttgctcctc
ttgctccagggtgctgagcccccaatgttatgttcccgtcagacgctgggccgaccctac
actgaggtcaccatgatgaccctgctcaccagcatggctgacaaggagctggtccatatg
atcgcctgggccaagaagcttccaggtttcctgcagctgtccctccatgaccaggtgcag
ctgctggagagctcgtggctggaggtgctgatgatggggctcgtctggagatccatccac
tgccccggcaaactcaacttcgcacaggacctcatactggacaggaatgagggcgactgt
gttgagggtatgtccgagatctttgacatgctgctcgccaccacgtcccgtttccgcatg
ctcaaactcagacctgaagagtttgtctgcctcaaagctatcatcttgctcaactctggt
gctttcgctttctgcaccagcacaatggagcccctacacgacagcgcggcagtacaaaac
atgctggacaccatcacagacgctctcatacattgcatcaaccaatcaggaggctcggtc
cagcagcagtcgagacggcaggcccagctgctcctactgctctctcacgtcagacacatg
agtaacaaaggcatggagcacctctacagcatgaagtgcaagaacaaagtgcctctgtac
gacctgctgctggagatgctggatgctcagcgcctccaacatccgatcagaccatcacag
ttctggtcccaagctgacaaggagcctccctccaccaccagcatcaacaacaacaacaac
aacaacaacaacaacagcagcagtggtagcggcagtggcagcggctcctcagctggctcc
agttcaggaatccgaggcacccatgagagcccgagcagacccccctcaggtttaggcgtc
ctgcagtacggagggtcccgctcggactgcaccaacatcctatga
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