Scomber scombrus (Atlantic mackerel): 133997750
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Entry
133997750 CDS
T10651
Symbol
ngs
Name
(RefSeq) notochord granular surface
KO
K07610
desmin
Organism
ssco
Scomber scombrus (Atlantic mackerel)
Pathway
ssco04519
Cadherin signaling
ssco04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
133997750 (ngs)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
133997750 (ngs)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
ssco04812
]
133997750 (ngs)
Cytoskeleton proteins [BR:
ssco04812
]
Eukaryotic cytoskeleton proteins
Intermediate filaments
Intermediate filaments
Type III
133997750 (ngs)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Filament
Filament_head
DUF7491
CCDC113_CCDC96_CC
PUMA_CC
Phage_scaffold
DUF724
CEP89
DUF1664
Wzy_C_2
ATG16
ODF2_C
Sec2p
Motif
Other DBs
NCBI-GeneID:
133997750
NCBI-ProteinID:
XP_062293440
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Position
17:complement(12744897..12748380)
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AA seq
404 aa
AA seq
DB search
MSLSPERMSSYRRHFDGTLDLAPTYQFRVSSPSPSRRETRHRSVSFTRSGRPMGRRATSN
NSRITSSMSMGTLCFDMSMGLGPKLDLDAAAAENQAFMKTRTNERQEMVVLNDRLTAYIE
KVRTLESKNKLLEAEIEDLKSRHVRSSGLRQLYESQLKELHRNAEEMRVQRDVSLATKEA
MLGQMGALKAKYDEAVEARKKTEQEIEALRPDVDKATSARIVLERQLENLEVELAFLQRV
HKEEIEELMKQLYSANSKVELSFGLPDLSSALQQIQSQYDSIAAKNLQEMDTWYKTKFED
LSTASTKHAQTVRNMREEIAGYKKDILNKERELDALKTRNEYLEDQICDTVEKYKKKEED
LQEHIEAIKLDLRLTKEKIALLLREYQDLLNVKMALEIEIITYR
NT seq
1215 nt
NT seq
+upstream
nt +downstream
nt
atgagcctcagtccagagaggatgtcttcataccgccgtcatttcgacggcaccctggat
cttgctcctacctaccagtttcgggtgtccagtccgtctcccagtcgcagggagacccgt
catcggtcggtcagcttcacccgaagtggcagaccgatggggcgcagggccacctccaac
aattctcggataaccagcagtatgagtatgggaacgttgtgcttcgatatgtccatgggg
ctcgggccaaagttggacttggatgcagcagcagcagagaaccaagcttttatgaagact
cgaaccaatgagaggcaggagatggtagtcctcaatgacagactgacagcatatatagaa
aaggtccgtacactcgagtcaaaaaacaagctgctggaggctgagattgaggacctgaag
agccgacatgtcaggtcatcgggcctcaggcaactatatgaatctcagctgaaggaactc
cacaggaacgctgaagaaatgagagtccagagggatgtgtctttggccaccaaggaggct
atgttgggccagatgggcgcgctgaaggccaaatatgatgaggctgttgaggcgaggaag
aagacagagcaagagattgaggctctccgtccagatgtggataaagcaacctcagcacgg
attgtgctggagaggcagctggaaaacctggaggttgagctggccttcctgcagagagtt
cacaaggaggaaattgaggagctgatgaagcagctctattcagcaaactcaaaggtggag
ctgagctttggtctcccagacctctcctctgccctccagcagattcagtctcagtacgac
agcatcgccgccaaaaacctacaggaaatggacacttggtacaagacaaagtttgaggac
ctgagcaccgcctccacaaaacatgcccaaactgttcgcaacatgagagaggagatagca
ggctataaaaaagatatcctcaacaaggaacgtgaattggatgcactaaagaccaggaat
gagtatttggaggatcagatctgtgacacagtggagaaatacaagaagaaggaggaggac
ctgcaggagcatatagaggcgattaagctggacctgaggctgaccaaggagaagatcgct
ctgctgctgcgggaataccaggacctactgaatgttaagatggctctggagattgagatc
atcacatacaggtga
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