Scomber scombrus (Atlantic mackerel): 133997804
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Entry
133997804 CDS
T10651
Symbol
ddx1
Name
(RefSeq) ATP-dependent RNA helicase DDX1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
Enzymes [BR:
ssco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
133997804 (ddx1)
Spliceosome [BR:
ssco03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
133997804 (ddx1)
Transfer RNA biogenesis [BR:
ssco03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
133997804 (ddx1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
133997804
NCBI-ProteinID:
XP_062293496
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Position
17:complement(13126983..13134967)
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AA seq
740 aa
AA seq
DB search
MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
IQIVYETLSDQKEGKKGRAAIKTGGAIFNSWQMNPYDRSSAFAIGPDGLCCQSREFKEWH
GCRSTKGVTKGKYYYEVTCHDQGLCRVGWSTSQAALDLGTDKYGFGFGGTGKKSHNKQFD
SYGEEFTMHDTIGCYLDLDKSQISFSKNGNDLGLAFEIPKNLQNQAFFASCVLKNAELKF
NFGGEDLKHQPKSGFVAFNQAPDGHSVKSSQTGSAKVSQLKPTSNAPKALILEPSKELAE
QTLNNVKHFKKYVDNPKLRELLVIGGVAAKEQLAALEQGIDIVVGTPGRLDDLISTGKLS
LSQVRFLVLDECDGLLSAGYTDFINRIHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE
RIMHFPTWVDLKGEDSVPETVHHVVVPVNPKNDHLWERLGKNHVRTDEVHAKDNTRPGAN
SAEMWSEAIKVLKGEYTVRAIKEHKMDQAIIFCRTKIDCDNMEQYFIQQGGGPDSKTHQL
SCVCLHGDRKPNERKNNLERFKRKEVRHLICTDVAARGIDIHGVPYVINVTLPDEKQNYV
HRIGRVGRAERMGLAISLVAMEKEKVWYHVCANRGRGCYNTRLKEDGGCTIWYNEKELLS
DIEEHLKCTITQCEPDIKVPVDEFDGKVSYGQRRALGGGNYKGHVDVLAPTVRELANLER
EAQTSFLHLGYMPNQLFRAF
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgttttctgaaatgggggttatgcctgaaatcgcgcaggctgtggaggagatg
gactggctgctacctactgacatccaggcagagtccattcccctcattcttggtggagga
gatgtacttatggcagcagaaactggtagcggaaaaacaggagcattcagtatccctgtg
atccagattgtgtacgagaccctgtcggaccagaaggagggcaagaagggcagagcagcc
atcaaaactggaggagctatcttcaacagctggcagatgaatccttatgaccgcagttca
gcctttgcaattggtccggatggactgtgctgccagagcagagagtttaaagagtggcat
ggctgtcgctctacaaaaggcgtcaccaaagggaagtactactatgaggtgacctgccat
gaccaggggctgtgtcgtgttggctggtccacaagtcaggcagcccttgacttgggaacc
gataagtatgggtttggttttggtgggactggaaagaaatcgcacaataagcagtttgac
agctatggcgaggagtttaccatgcatgatactattggatgctacctggatcttgacaag
agccaaatttccttctctaaaaatggtaatgacctgggtttggcttttgagattcctaaa
aatcttcagaatcaggccttctttgcctcctgtgtgctcaagaatgcagagctgaagttt
aactttggaggagaagacttaaaacatcaacctaagagtgggtttgtcgccttcaaccag
gcaccagacggtcactcagtcaaatcttctcagacaggcagtgccaaagtgagtcagctg
aaaccaacatccaatgcacccaaagccctgatcctcgagccttctaaagaactggctgaa
cagaccctcaacaatgtgaagcactttaagaaatatgtggataatcccaaactcagggaa
ctactggtaattggcggtgtggctgccaaagagcagctggctgctctggaacaagggatc
gacattgtggtgggaacacctggcagactggacgaccttatatccactgggaaactcagc
ctatcccaagtccgctttcttgtcctggatgagtgtgatggcctcctatcagcaggctat
actgacttcatcaacaggatccataaccaaatcccacaggtcacttctgatggcaagagg
ctgcaggtgattgtgtgctcagccacgctgcattcgtttgacgtgaagaagttgtctgag
cgcatcatgcactttcccacatgggtggacctgaagggcgaggactctgttcccgagact
gtccaccatgtggtggtgcctgtcaaccccaagaatgatcacctgtgggagcggctgggc
aagaaccacgtcaggactgacgaagtccatgccaaagataacaccagaccaggagccaat
tcagcagaaatgtggtcagaagctattaaggtactgaagggcgagtacacagtgagggcc
atcaaagagcacaaaatggaccaggccatcatcttctgtcgcaccaagattgactgtgac
aacatggagcagtacttcattcagcagggaggaggtccagacagtaaaacccaccagttg
tcctgtgtttgtctccatggtgatcgtaagcccaacgagaggaaaaataacttggagcgc
tttaagagaaaagaagtgagacacctgatctgcacagatgtagctgccagagggattgac
atccacggagttccttatgtgattaacgtcaccctgccagatgagaagcagaactatgtc
catcgtatcggcagagtgggcagagcagaaagaatgggtctggccatctccttggttgct
atggagaaggagaaggtgtggtatcacgtttgcgcaaaccgaggccgaggatgctacaac
acccgactgaaggaggacggaggttgcaccatctggtacaatgagaaagagcttctgtca
gatattgaggaacatctaaagtgcaccatcacccagtgtgagcctgacatcaaagtacct
gtggatgagtttgatggaaaggtctcttacggtcagcgcagagcattgggaggtggtaac
tacaagggtcacgtggatgtgctggccccgacagtccgtgagctggctaacctcgagaga
gaggcccaaacttcgttcctccatctgggatacatgccaaaccagctgttcagggccttc
tga
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