Scomber scombrus (Atlantic mackerel): 133998030
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Entry
133998030 CDS
T10651
Symbol
taf1b
Name
(RefSeq) TATA box-binding protein-associated factor RNA polymerase I subunit B
KO
K15213
TATA box-binding protein-associated factor RNA polymerase I subunit B
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssco03021
]
133998030 (taf1b)
Transcription machinery [BR:
ssco03021
]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
133998030 (taf1b)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Rrn7_cyclin_C
Rrn7_cyclin_N
Zn_ribbon_RRN7
Motif
Other DBs
NCBI-GeneID:
133998030
NCBI-ProteinID:
XP_062293752
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All DBs
Position
17:5091977..5100512
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AA seq
599 aa
AA seq
DB search
MDEEHTAGYTEPCGVCSAVDWGISDECHFYCRSCHNVIERTKEVVDLNFTPGTTRISTIG
RGARTKKNERGREWRICEGFQFILRNQADALLRLGVSPHFKDQVLCQLWRLYLQKSRQAF
TNNPVKSSRLKLRNPDSESDSAPESTVISASETDGEANQSSTAASNTDYSSEWSQCSGSM
DADTYLTPRLKRGRSLMNLKKTLALIHLALVWSREALTLSDLLRLVKEGFVPYCNAYEDL
PEEMKLEGKDALIFRDERDPSHQAVHREAQNLALFLQLPAFPPIGRQSLLHPAMLSLRYM
TDANLPDELHPWICRLMERAGMADQTLHTFNPPARSILPRYDLQAAALIIVTLKLLFGLD
DHSEWILSNEVNILDNKGDMFNLRRWYRLLQAALLRAQQRRDQETARKTWKAQKLIYMNK
KDKWVAMKRKRIAEQVQICFEKLSSRMAGVQRDGPSSFIFCWGDEDGADGPSLHQQKLDG
VVTLKSEVLTPSNSTYWHPSLRLCKEWRCKSHYKEVEPTLPRMFVWLLQLFSFLLDVKPF
CMYEEVLTMERRIIGHKTQRHKPLNRKRTKTSPKIQKRGQDNEPGLKKNQKRKKTQLQE
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atggacgaagagcacacggccggctacacagagccctgtggggtgtgttcagcggtggat
tggggcatttcagacgagtgtcatttctactgcaggtcctgtcacaacgtcatcgagaga
accaaagaggttgtggacctgaacttcactcccggcaccactcggatctccaccattggc
agaggagccagaactaagaaaaacgagcgaggacgcgagtggaggatctgtgaaggcttc
cagttcatcctgagaaaccaggccgacgctctgctcagactgggagtctcgcctcacttc
aaggaccaggttttgtgtcagctgtggagactctacctgcagaagagtcggcaggctttc
accaacaacccagtgaagagctccagactcaaactgagaaatccagactcagagtcggac
agcgctcccgagtccaccgtcatatcggccagcgagacggatggcgaggcgaaccagtcc
agcacggccgcctctaacacagactactccagtgaatggtcgcagtgttcgggctcaatg
gacgccgacacctacctgacgcctcggctgaagcgtggccgcagtctgatgaacctgaag
aagactctggctctgatccacctggctctggtctggagccgcgaggcgttgacgctcagc
gatctgctcaggttggtgaaagaaggattcgtcccgtactgcaacgcttacgaagatctt
cctgaagagatgaagctggagggcaaagatgcgctcatcttcagagacgagagggatccg
tctcaccaggcggtgcatcgagaggctcagaatctggctctgttcctgcagcttcctgct
tttcctccaatcggcaggcagagtctgctgcacccggcgatgctcagcctgcgctacatg
accgacgccaacctgcccgacgagctccacccgtggatctgcaggctgatggagcgcgcc
ggtatggcggatcaaacgctccacacgttcaatcccccggctcgttccatcttgcctcgg
tacgacttgcaggccgctgcactcatcatcgtcaccctgaagctcctcttcggcctggac
gaccacagcgagtggattttatcaaatgaagtgaacattctggacaataaaggcgacatg
tttaacctgcggcggtggtaccggctgctgcaggccgctctgctccgagctcagcagagg
agagaccaggaaaccgccaggaagacatggaaggcacagaaactgatatacatgaacaag
aaggacaaatgggtagcgatgaagaggaaaagaatagcagagcaggtgcagatctgtttc
gagaagctgtcctctcggatggcgggcgtccagcgcgatggtccgtccagcttcatattc
tgctggggggacgaggacggagcggacggacccagtcttcaccagcagaaattggatggc
gtcgtgaccctgaaatcagaagtcctgacgccctccaactcaacatactggcacccatcg
ctcagactctgcaaagaatggaggtgcaagagtcactataaggaggtggagccgacgttg
ccgcggatgttcgtctggctgctgcagctcttctccttcctgctggacgttaagccgttc
tgcatgtacgaggaggtgctgacgatggagagacgaatcatcggacacaaaacacaacgg
cacaaacctttgaacaggaagaggaccaagacttcaccgaagatacagaagagagggcaa
gacaacgaaccggggttaaaaaaaaaccaaaaaaggaagaaaactcagctgcaggaataa
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