Scomber scombrus (Atlantic mackerel): 133998633
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Entry
133998633 CDS
T10651
Symbol
pecam1b
Name
(RefSeq) platelet endothelial cell adhesion molecule isoform X1
KO
K06471
platelet/endothelial cell adhesion molecule
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04148
Efferocytosis
ssco04514
Cell adhesion molecule (CAM) interaction
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
133998633 (pecam1b)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
133998633 (pecam1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
ssco04090
]
133998633 (pecam1b)
00536 Glycosaminoglycan binding proteins [BR:
ssco00536
]
133998633 (pecam1b)
04091 Lectins [BR:
ssco04091
]
133998633 (pecam1b)
CD molecules [BR:
ssco04090
]
Proteins
133998633 (pecam1b)
Glycosaminoglycan binding proteins [BR:
ssco00536
]
Heparan sulfate / Heparin
Adhesion molecules of cell surface
133998633 (pecam1b)
Lectins [BR:
ssco04091
]
I-type lectins (Siglecs)
133998633 (pecam1b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ig_2
Ig_3
ig
I-set
Ig_C17orf99
Zwei_Ig_N
C32D5_mid
Motif
Other DBs
NCBI-GeneID:
133998633
NCBI-ProteinID:
XP_062293864
LinkDB
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Position
2:complement(5414761..5431272)
Genome browser
AA seq
767 aa
AA seq
DB search
MGRLTLILLTSTLLSSYFHPGRVVDAQSIFTIREVSLSMEPSNDVPRDTNVTVRCRAVVS
SLGQEVLNRQYTILKDRVQVYTKTTTSSEDLLYPLPMARAFNSGKYTCQIAIEDKREVSK
YQKLTVTGLSKPELHLNKAVVNEGEEVTVRCTAPGETGSIIFYFYEDSKEIKEEQVSSNY
AETKIRFTSTGIHKCHCAYTVVVVPDAFRSEQSNIVTVSVKEIPYTPVLEILPIYKIYEG
DTLDISCSLRRPQYSSQSTQLILSQGTQLLSSGTKDKLNHSLVALAKHSGEFECRLEIGN
VVKVAKKNVSVTELFSLPTLTMSPVEVFPREPLTLICKSESLASERLHKEELTYTLEPSD
AYLIPRGAGVFQGKALNADFNYTCTATAKGIMKQSKILTVRPKLPVSAPKITVLSKVILG
RPFEILCNSSTGTLPINYTLLHDYMPMDMITVKQPYEEARFTVTITRTDDISKYICQANN
GRKELSRRLDATVIVPLSHPTLTVVPTLGEIYEGDHLYLICGVQGTPPVTFKWYRVGNEN
PLYSTTSNSNNTDYQVKDLAKHHSGMYFCEAINPANTAVGSNPVTIEVRMALWKKALIGG
ICLLVLAVLALLFVLYYRSKRGRREAAAELSVKPSSPKSDDSLRLNLTHDTEVYNAATVR
VDRAVTSVWSERPPEAAANDEETSMMSNEPDVEYTEVVHTRAVDSAQVPLKKGTDTVYSE
LQNAPHGATDPHDYGSVEYAELNGEKPEINHSYTEVNNYQDLPVPVD
NT seq
2304 nt
NT seq
+upstream
nt +downstream
nt
atgggccgcctaaccctaatactgctcacctccactctcctgtccagctacttccatcca
gggagagtggtggatgcacagtcaatattcacgataagagaagtcagcctgtccatggag
cccagtaatgatgtccctcgggacaccaatgtgacagtgagatgccgtgccgttgtcagc
agcttaggccaggaggtactaaatcgtcagtacaccatactcaaggacagggtccaggtc
tatacaaagaccaccaccagctcggaggatcttctgtacccgctgcccatggccagagcc
ttcaacagcggcaaatatacgtgccagatcgccattgaggataaaagggaggtcagcaag
tatcagaaactcacagtgacaggcttgtcgaaaccagagctccatcttaacaaggctgtg
gtcaatgagggggaggaggtaacagtcaggtgcacagcgcccggtgagacaggctccatc
attttctatttctacgaagactccaaagagatcaaggaggagcaggtcagctccaactac
gctgagaccaagattcgcttcaccagcactggcatccacaaatgtcactgtgcctacact
gtggtggtagtgccagacgccttcaggtctgagcaaagcaacatcgtcactgtttcagtc
aaagaaataccctacacgccggttttggagattttgcctatctacaaaatctatgaagga
gacacactcgacatctcttgctccctcagaagacctcagtacagttctcaaagtactcag
ctgatcctgagccaggggacccaacttctcagcagcggcactaaagacaaactcaaccac
agcctggtcgcactggcaaagcactcaggggagtttgagtgcaggttagagataggaaat
gtagtgaaagttgccaaaaagaacgtttcagtgactgagttgttttcattgcccactctc
accatgtctccagttgaagtctttccaagggaaccactgacactaatctgcaaaagtgaa
agccttgcctccgaaagactccacaaggaagaattgacgtacactctggagccatctgat
gcttacctaatcccaaggggcgctggggtatttcaaggcaaggccctgaatgctgatttc
aactatacctgcacagctacagccaagggcatcatgaaacaaagtaaaatcctgaccgtc
cgtcctaaacttcctgtctccgctccaaagatcacggtgcttagcaaggtgatcctcgga
cggccctttgagatcctctgtaactcaagtactggcaccctgccgataaactacacccta
ctgcatgactatatgccaatggacatgatcaccgtcaagcagccctatgaagaagcgcgc
ttcacagtcaccatcactcgcactgatgacataagcaagtacatatgccaggcaaataat
ggtcgcaaggagctcagtagaagacttgacgctactgtcatagtgcctctttcacacccg
actctgaccgtcgtccccaccttgggagaaatctatgagggagatcatctttacttgata
tgtggtgtccaaggcacaccgccggtcaccttcaagtggtatcgtgttgggaacgaaaat
ccactgtacagcaccacctccaactccaataacacagactaccaggtcaaagatttggcc
aaacatcacagcggcatgtacttctgcgaagccatcaaccctgccaacactgctgtcggc
agtaacccggtcaccatagaggttcgcatggcattgtggaagaaagcgttgattggaggg
atctgtttgctggtgttggcggtgctggcgttgctgtttgtgctgtactacagatccaag
agaggtagaagagaagcagctgctgaattgtcagtaaagccttcgagccctaaatcagat
gactctttaagattgaatctaacccacgacacagaagtttataacgcagctacagtgaga
gtggacagagcagtcaccagtgtgtggagcgagcgaccacctgaagcagcagccaatgat
gaggagaccagcatgatgtccaacgagcctgatgtggagtacactgaggtagtgcatacc
cgggcggtagattcagcccaagttccgttgaaaaaaggcacagacactgtgtacagcgag
ctccaaaacgccccacatggtgctactgaccctcatgactatggttcagtagaatacgct
gagctcaacggtgaaaaacctgagatcaatcacagctatacagaggtcaacaactaccag
gacctgccggtgccagtggattaa
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