Scomber scombrus (Atlantic mackerel): 133998961
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Entry
133998961 CDS
T10651
Symbol
mgrn1b
Name
(RefSeq) E3 ubiquitin-protein ligase MGRN1b
KO
K10604
E3 ubiquitin-protein ligase MGRN1 [EC:
2.3.2.27
]
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04120
Ubiquitin mediated proteolysis
ssco04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
133998961 (mgrn1b)
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
133998961 (mgrn1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ssco04121
]
133998961 (mgrn1b)
Enzymes [BR:
ssco01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
133998961 (mgrn1b)
Ubiquitin system [BR:
ssco04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
133998961 (mgrn1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C3HC4_3
zf-RING_2
Prok-RING_4
zf-C3HC4
zf-C3HC4_2
zf-RING_11
Motif
Other DBs
NCBI-GeneID:
133998961
NCBI-ProteinID:
XP_062294012
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All DBs
Position
18:10620404..10630315
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AA seq
549 aa
AA seq
DB search
MGSILSRRIAGVEDIDIQANSAYRFPPKSGNYFASHFFMGGEKFDTPHPEGYLFGENMDL
NFLGNRPVQFPYVTPAPHEPVKTLRSLVNIRKDSLRLVRYKDDSDTPVEEGGKPKVQYGV
EFTFDADARVTITLYCQAFEEFSNGMAVYSPKDPTMVSETVHYKRGVSQQFSMPSFKIDF
SEWKEEDFNFDLDRGVFPMVIQAVVDEGDDCLGHAHVLLAAFEKHVDGSFSVKPLKQKQI
VDRVSYLLQEIYGIENKNNQETKPSDDENSDNSNECVVCLSDLRDTLILPCRHLCLCNSC
ADTLRYQANNCPICRLPFRALLQIRAVRKKPGALSPVSFSPVLAQTMDHDEHSSTDSVPP
GFEPISLLEALNGMRSVSPSIPSAPLYDEINFSGGIGGDSRQLSSPEHLSDSSLQKGKVS
KSPDSTLRSPSSPIQEEDEEKLSEMSDAQPHTMLSSSPAPTDATAAEDVAESLPPDDEDR
MHTGGDILQDCSSEHSSLTKTESDPPGDLSLPGSSESTESLKSQSTNCSSQPLLCPTSSL
HIEDEHLNP
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
atgggctccatcctgagccgccgaatcgctggtgttgaggatatcgatatccaggccaac
tcggcttatcgatttccacctaaatctggaaattattttgcgagccacttcttcatggga
ggagagaaatttgacacaccacatcctgaaggatacctttttggagaaaacatggacctc
aattttcttggaaatagaccggtgcagtttccatatgtgacacctgcaccccacgagcca
gtgaaaaccttgaggagtctggtcaacattagaaaggattctttgcgtttggtcaggtat
aaagatgactccgacactccggtggaggagggtggaaaaccaaaggtccagtatggtgtg
gagttcacctttgatgctgacgcgcgggtgaccatcaccctctactgccaagcatttgag
gaattctccaatgggatggcagtgtacagcccaaaggatccaacgatggtttctgagact
gtgcattacaagaggggggtgagccaacagttctccatgccatctttcaagatagatttc
agcgagtggaaagaggaagattttaactttgacctggaccgaggagtgtttcccatggtg
atccaggctgtggttgatgagggggacgattgccttggacatgctcacgtacttttggcg
gcctttgaaaaacacgttgatggcagtttctccgtcaagccactgaagcagaaacaaatt
gtggaccgtgtgagctacctcttacaggagatctacgggattgagaacaagaacaaccaa
gaaaccaagccatcagatgatgagaacagtgataacagcaacgagtgtgttgtctgtttg
tcggacctgcgagacacactcatcctaccctgcagacatctgtgtctctgcaactcctgc
gccgacaccttgcgttaccaggccaacaactgcccaatctgcaggctgcccttcagagcc
ttgctgcagatcagagccgtgagaaaaaagcctggagctctttctcctgtgtccttcagt
cctgttctggctcagactatggaccatgatgagcactcaagcacagactcggttcctccc
ggctttgaacccatctcactgttagaggctctgaacggcatgcggtcagtgtctccttcc
atcccctccgccccgttgtacgatgaaatcaacttttcaggcggcatcggaggcgacagc
agacagctgagctccccggagcatttaagtgacagcagtctgcagaaaggcaaagtcagc
aagtcacctgacagcacccttaggtctccatcctctcccatccaggaggaggatgaggag
aagctgtcagagatgtcggatgctcagccgcacacaatgctgtccagcagccccgctccc
accgacgctacagcagccgaggacgtggcagagtctctgcctccagacgatgaggacagg
atgcatactggtggagacatcttacaggactgcagcagtgagcacagcagcttgaccaaa
acagagagcgacccgccgggtgacctttctctgccaggttcatcagagtcaacggaaagc
ctgaaaagtcagagcacaaactgctccagccaacctctcctttgtcccacgagcagcctt
cacatagaagatgaacacctcaacccttga
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