Scomber scombrus (Atlantic mackerel): 133998982
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Entry
133998982 CDS
T10651
Symbol
ddx42
Name
(RefSeq) ATP-dependent RNA helicase DDX42 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03040
Spliceosome
Brite
Enzymes [BR:
ssco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
133998982 (ddx42)
Spliceosome [BR:
ssco03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
133998982 (ddx42)
Complex B
133998982 (ddx42)
Complex C
U2 SnRNP specific factors
133998982 (ddx42)
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Other DBs
NCBI-GeneID:
133998982
NCBI-ProteinID:
XP_062294041
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Position
18:complement(6389403..6398984)
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AA seq
913 aa
AA seq
DB search
MNWSKGGPGVKRGFGFGGFSLAGKKEEPPQLNQKSHTSFGPPGSSGYGKNQQLPSFYKIG
TKRANFDEENAYFEDDEEESSSNADLPYIPAENSPTRQQMQSGGGSDSEDDPLDAFMAEV
ENQAAKDMKKLEEKEKEKKSAKGIRDDIEEEDEQEAYFRYMAENPTAGLTQEEDDENIDY
DSDGNPIAPTTKKIILPLPPIDHTEIDYPPFEKNFYNEHEELINLTGIQVIELRQKLNLR
VSGAAPPKPSTSFAHFTFDEQLMHQIRKSEYTQPTPIQCQGVPIALSGRDMIGIAKTGSG
KTAAFIWPMLVHIIDQKELEPGEGPIAVIVCPTRELCQQIHAECKRFGKAYSLRSVAVYG
GGSMWEQAKALQDGAEIVVCTPGRLIDHVKKKATSLQRVSYLVFDEADRMFDMGFEYQVR
SIASHVRPDRQTLLFSATFRKKIERLARDILVDPIRVVQGDIGEANEDVTQVVEMLHSGI
DKWGWLTRRLVEFTSSGSVLIFVTKKANSEELATNLTQEGYSLGLLHGDMDQSERNKVIS
DFKKKNLPILVATDVAARGLDIPSIRTVVNYDVARDIDTHTHRIGRTGRAGEKGVAFTLL
TNKDTSFAGDLVRNLEGANQSVSKELMDLAMQNPWFRKSRFKGGKGKKMNIGGGGLGYRE
RPGLGAESSGSSSSSSIMSSASSYEGYSKPNTGAMGDRMSAMRQAFQAQYKSHFVAASSG
PPKLTTKSNSSSGWTSAGSLSSVPTESPNGSERSHAATMSMSGFTSAGTLSSVPASQTSP
QQSFPPVAPAPLRDNSRERHQEDWGRHGDSHHRHGSDRSDRHGGDSRHGDRERHGDRDRD
RHGDRDRYSSSSGGSSGGGGGSRHGDSRNGDGNRRDREDRRSERDGGEGRGDRGDDSFAV
PEPPKRRKSRWDN
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
atgaactggagcaaaggtggtccaggtgttaagcgaggttttgggtttggaggattttcc
cttgcggggaaaaaagaggaaccacctcaacttaatcaaaagtctcacacatcattcggg
cccccaggatccagtggatatgggaaaaaccagcagcttccatccttctacaaaatagga
acaaaaagagccaattttgatgaagaaaatgcgtattttgaagacgacgaagaagagtcc
agcagcaatgcggatctgccgtacatccctgctgagaactcgcccacacggcagcagatg
cagtctggcggcgggtcagacagcgaggacgacccgctggatgcttttatggcagaggtt
gagaaccaagcagctaaagacatgaagaaactagaggagaaggaaaaggagaaaaagtca
gccaagggtattcgtgatgacattgaagaagaagatgaacaagaagcctacttccgctac
atggcagagaaccccacagccggcctgacacaagaggaagatgacgagaacattgattat
gacagtgatggaaacccgattgcaccgaccaccaagaaaatcatcctgcctcttcctcct
attgatcacactgagattgattacccgccgtttgagaaaaacttctacaacgagcacgag
gagctcatcaacctgacaggaattcaagtgatcgagttgaggcagaaactgaacttgcgg
gtgtctggtgccgcccctcctaaaccttccacaagctttgcccatttcacctttgatgag
cagctgatgcaccagatacgcaagtctgagtacactcagcccactccaattcagtgccag
ggtgtgcccatagctctgtctggacgtgacatgattggtatcgccaaaactggcagcggt
aaaactgcagctttcatctggcccatgctggttcacatcatagaccagaaggagctggag
ccaggagaggggcccatcgcagtgatcgtgtgtcccaccagagagctttgtcagcagatc
catgcagaatgtaagcgtttcgggaaagcctactcattgcgttctgtggcggtttatgga
ggaggcagcatgtgggagcaggctaaggctctgcaggatggagcagagattgtggtgtgc
acaccgggtcgtctgattgaccacgttaaaaagaaagccacatccctgcagagagtgtcg
tacctggtgtttgatgaggctgatcgcatgtttgatatgggctttgaatatcaggtcaga
tctatcgccagtcacgtccgcccagacagacagactcttctgttcagcgctacctttcga
aagaagatagagagactagccagggacatcttggtagatcctattcgtgtggtgcaggga
gacattggagaggccaacgaggatgtgacccaggtggtggagatgcttcacagcgggatt
gataaatggggctggctcacccggcggctggtagagttcacctcctctggctcagtcctc
atcttcgtcaccaagaaggccaactccgaggagctggcgactaacctgacgcaggaaggc
tatagcttgggcctcctgcacggagacatggaccagagtgagaggaacaaggtcatcagt
gacttcaagaagaagaatttgcccattttagtggccaccgatgtagcagctcgcggtctg
gacatcccgtccattcgtaccgtggtgaactatgacgtggcgcgagacatcgacacgcac
acgcacaggatcggccgaaccggtcgtgccggagagaaaggtgtggctttcaccctcctc
actaataaagacacctcattcgctggtgacctggtgaggaatctggagggagccaatcaa
tccgtttccaaagaactgatggacttagccatgcagaatccgtggttcagaaagtccaga
tttaaaggaggcaaaggaaagaagatgaatatcggtggaggtggacttggttacagagag
agaccaggactgggggctgaaagctctggatcgagcagcagcagcagtattatgtcttcc
gctagcagctacgaaggttacagcaaaccaaacacgggggcaatgggagaccgcatgtca
gcgatgagacaagccttccaggctcagtataagagtcactttgtggctgcgtccagcggc
cctccaaagctcaccaccaagtccaacagctcctcaggttggaccagtgccggcagcctg
agctctgtacccacagagtcccccaacggctcagagcggtcccacgctgccaccatgtcc
atgtcgggcttcaccagcgccggcaccctgagctcagtgcccgccagtcagaccagtcca
cagcaaagcttccctccagttgcccccgcccccctacgagataactcacgggaaagacac
caggaggactggggtcgccacggagacagtcaccaccgccacggcagcgacaggagcgat
cggcacggcggagacagtcgccatggggatcgggaacgccacggagacagagatcgtgac
cgccatggggaccgggatcgctacagtagcagcagcggtggcagcagcggtggcggtggt
ggcagccgccacggcgacagtcgtaacggagacgggaacagaagggacagagaggaccga
cggagtgagagggatggaggggaggggaggggggacagaggagatgatagctttgctgtt
cccgaaccgccaaaacgtagaaagagtaggtgggacaactaa
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