Scomber scombrus (Atlantic mackerel): 133999023
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Entry
133999023 CDS
T10651
Symbol
casc3
Name
(RefSeq) LOW QUALITY PROTEIN: protein CASC3
KO
K14323
protein CASC3
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03013
Nucleocytoplasmic transport
ssco03015
mRNA surveillance pathway
ssco03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133999023 (casc3)
09122 Translation
03013 Nucleocytoplasmic transport
133999023 (casc3)
03015 mRNA surveillance pathway
133999023 (casc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssco03019
]
133999023 (casc3)
Messenger RNA biogenesis [BR:
ssco03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
133999023 (casc3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Btz
Motif
Other DBs
NCBI-GeneID:
133999023
NCBI-ProteinID:
XP_062294118
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Position
18:complement(1221405..1244392)
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AA seq
812 aa
AA seq
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MADRRRRRRRVSQDSEDDDESGSGSDSGRSGSPATKNRGREPAPVEAVTGRVEPKKDVES
ECESEDGVGEAVLSDYDSADPEENGSHSEGVEEEEEEAAAAVAVAVLSEEEAPAAAKEPV
PSATEVQTQGEEEEREEEEEGREEEEEEEEDADAEEKEGGEGGGGVSKEESKVEEKGDLA
GERQSGDGQESTDDPETKAGGKPGQKLDDDEDRKNPAYIPRKGLFFEHDVRGHAQEEERP
KGRNRKLWKDEGRWEHDRFREEEQAPKSREELIAIYGYDIRNGGGSGSGDRPYRQRRPRQ
SLSPSRDKRWREGGGERAVRSWQNSGGPNRGGAPPSSIHPSSSSSPSSVPLSSAQRSSNY
SRPPPSRSRPNQTHLPPQPQYRNNESNAPQMHQRDRQGSKAQSEAFGRQRSQQGGARQTG
RGGSSVVIEDITVSQGGVGEEERGLTAGTPSSSSHSSGYQSALPRRQQQDQRGSADRAAS
TSDPALQSSAAATTNREVSPPAERPVERKSYSLARRTRSRPADLGSKQPSVEESAAGGNA
ASSPGSTGGEELVGRRATGRARREEVVVEEEVVEEVVVEEEGAGGLGGDSTRTLLGFSLA
GQSWSQSPTSYIRSEMRGLPNPMHIPGGPPPFSSMEEMGVGSNRAKRYSSQRQRAVPEPA
PPMHLGVMEGHYYEPMSYQGPIYGHGDGPAPIPPQGMLVQPEMHLPHPGLHPHQSGGPIA
NPAIYGGPPVSLSPGQPQQLLPPPFYPPPGVMTFPYPTMYPTPQAQAQVTYGGVTYYDTM
QQQAQPKPSPPRRTSQPVTVKPPPPEVPFASE
NT seq
2439 nt
NT seq
+upstream
nt +downstream
nt
atggcggaccggcggcgaaggaggaggcgcgtgtcccaggacagcgaggacgacgacgag
tccggttcgggctcggacagcgggaggtcgggttccccggcgaccaagaaccgggggaga
gaaccggccccagtggaggctgtaacgggccgcgtggagccgaagaaggacgtggagtcc
gagtgtgaaagtgaagatggagtcggagaagctgtcctctcagactacgacagcgcagat
ccagaagaaaacggctcccactcagagggagtggaggaggaagaggaggaggcggcggcg
gcggtggcggtggcggtgctaagtgaggaagaagctccagcagcagccaaagagcctgtt
ccctctgctaccgaggtccaaacgcagggggaggaagaggagcgggaggaggaagaagag
gggcgggaggaggaggaagaggaggaggaggatgcagatgcagaggagaaggaaggagga
gaaggaggaggaggagtgagtaaagaggagagcaaagtggaggagaaaggagacctagct
ggagagagacagagcggtgatggacaggagtcgacggacgatcctgagacgaaggcggga
ggaaaacccggccagaagctggacgacgacgaggaccgaaagaacccggcttacatcccc
agaaagggtttgttcttcgagcacgacgtcagaggacacgctcaggaggaggagaggcct
aaaggcaggaacaggaagctgtggaaggacgagggtcgctgggagcacgacaggttcagg
gaggaggagcaggcgccgaagagccgcgaggagctcatcgccatctacggttacgacatc
cgcaacggcggcggcagcggctccggagatcgaccgtacagacagcggcggcctcgacag
agcctgtcgcccagcagagacaaacgctggcgagagggaggaggagagcgagcggttcgt
tcctggcagaacagcggaggtccgaaccgaggaggagctccaccttcatccatccaccct
tcctcctcctcctccccctcctctgtccctctctcctccgctcaacgtagcagcaactac
tccagaccgcctccctcccgcagcagacccaatcaaacgcacctcccgcctcagccccag
tacaggaataatgaatcaaacgcaccccagatgcatcaaagagacagacagggctcgaaa
gctcagtcggaagcctttgggagacagaggagtcagcaggggggggcgaggcagacgggg
aggggaggttcctccgtggtcatcgaggacattacagtcagtcaaggcggcgtcggggaa
gaggagcgcggcttaacggccgggacgccatcctcatcgtcgcattcgagcggttatcag
tctgcgttgccgaggcgacagcagcaggatcaacgaggcagcgccgacagagccgcctcc
acctctgaccccgccctgcagtcgtcagcggccgcaacgaccaatcgggaagtttctcct
cccgccgagcggccggtggagcgtaaatcgtactcgctggctcgcaggactcgctctcgg
cccgcggacctgggcagcaagcagccgtccgtggaggagtctgcagccggagggaacgcc
gcctcctcccccggcagcacggggggggaagagctggtcgggaggagggcaacgggccga
gccaggcgggaggaggtggtggtggaggaggaggtggtggaggaggtggtggtggaggag
gagggagcgggggggctgggcggagattcgaccaggacgttgctcggcttcagtctggcc
gggcagagctggagtcagagtccgacctcgtacatccgctctgagatgagaggcctcccc
aaccccatgcacatccccggcggcccgcctccgttctccagcatggaggagatgggcgtc
ggatccaaccgggccaaacgctactcgtcccaacgccagagagccgtccctgagccggcg
ccgcccatgcacctgggagtgatggagggacactactacgagcccatgtcgtaccaggga
ccaatctacggccacggggacggccccgcccccatcccgccgcagggcatgctggtccag
ccagagatgcacctcccgcatcccggcctccatccccaccaatcaggcggccccatcgcc
aaccccgccatctatggaggcccgccggtgtctctgtcgccagggcaaccacagcagctg
ctgcctccacctttctaccctccgccgggcgtcatgacgttcccttaccccaccatgtac
ccaacgcctcaggctcaggcccaggtgacgtacggaggtgttacctactatgacaccatg
cagcagcaggctcagcccaaaccatcacccccccgccgcacatcccagcctgtcaccgtt
aagcccccccctccggaggttcccttcgcctcagagtga
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