Scomber scombrus (Atlantic mackerel): 133999053
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Entry
133999053 CDS
T10651
Name
(RefSeq) xylosyltransferase 1-like
KO
K00771
protein xylosyltransferase [EC:
2.4.2.26
]
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco00532
Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
ssco00534
Glycosaminoglycan biosynthesis - heparan sulfate / heparin
ssco01100
Metabolic pathways
Module
ssco_M00057
Glycosaminoglycan biosynthesis, linkage tetrasaccharide
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
133999053
00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
133999053
09180 Brite Hierarchies
09181 Protein families: metabolism
01003 Glycosyltransferases [BR:
ssco01003
]
133999053
Enzymes [BR:
ssco01000
]
2. Transferases
2.4 Glycosyltransferases
2.4.2 Pentosyltransferases
2.4.2.26 protein xylosyltransferase
133999053
Glycosyltransferases [BR:
ssco01003
]
O-Glycan biosynthesis
Glycosaminoglycan
133999053
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Xylo_C
Branch
Motif
Other DBs
NCBI-GeneID:
133999053
NCBI-ProteinID:
XP_062294161
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All DBs
Position
18:complement(2667758..2708345)
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AA seq
939 aa
AA seq
DB search
MKGNPCARRLARRSKSALLVAALAVLLVQTLIVWNFSSLDSSGGDGGARNREKREERTAA
LNKADGEHPRRGLHKRGDPLQGKAAARHKLQANVYHSHRLKEKLRLDSNNNENSVPKDFD
TIDSNSNLGARSQRQRAPVANAAKRKLDKSQVQSMLGKSANEVLKHPPVQARGAGHNHNR
THVRKPHPPLPTVPAPAQGSNQDPPFYPSKKAATPPPMLQLLPGSEPRKELPQCEISGKE
AISALSRAKTRECRQKIVNVYCKHKERALMPEKVPRYCPVEGKVNVNVPWDEERSDSAAR
TPVRIAFVLVVHGRASRQFQRLFKAIYHTSHYYYIHVDQRSNYLHREVLLLASQYSNVRV
TSWRMSTIWGGASLLTMYLRSMEDLLKMSDWSWDFFINLSAADYPIRTNEQLVAFLSRYP
NMNFIKSHGRDNARFIRKQGLDRLFYECDTHMWRLGDRKIPEGIAVDGGSDWFLLNRAFV
DYVVNSQDELVSSMKRFYAYTLLPAESFFHTVLENSAHCESMVDNNLRLTNWNRKLGCKC
QYKHIVDWCGCSPNDFKPSDLPRFQQASRPTFFARKFEASVSQEIISQLDSYLFGAHASG
TPGLQAYWENAYEQETDGLASVSDSLVSHYQAFARMGLSRAASSLQGHPNDNSCRYVAMS
NPVSVHFYFLSDQFQGYLVRHMATNRASTQLESLETWVTTKDHFTLASPPYPNNRLQHIQ
VGMDWDPKERLFRNWGGLLGPQDEPVAVQRWSRGQNNLTATVVWIDPTNVIAATYDILVD
ATAEVTHYRPPLTSPLRPGVWTLRVLHHWTPLGQTSFIVAPLEFHKQQPIQQEAALRLHG
GPPRNSYMEQSFHGLNPVLRLPVSLGAVEEAEANAGLTGAPLRRWLDRLLEGHWSAADVC
STGPSACPVMQRCRLTAWSSASPDPKSELTPPREDGRIR
NT seq
2820 nt
NT seq
+upstream
nt +downstream
nt
atgaagggtaacccgtgcgcccgcaggctggcccgacgctccaagtccgccctgttggtg
gctgctctggccgtgctgctggtccagactctcatcgtgtggaacttcagcagcctggac
tccagcggcggagacggaggcgctcggaaccgggagaagagagaggagcggaccgccgcg
ctcaacaaagccgacggggagcacccgaggagggggctgcacaagagaggcgacccgctg
caaggaaaggcggccgctcgacacaagctgcaggcgaacgtttatcactcacatcgcctg
aaagagaaacttcgcctggacagcaacaacaacgagaactccgtccccaaagacttcgac
accatcgacagtaacagcaacctgggagctcgatcccaacgccagcgagcgcccgtcgca
aacgccgccaaacgcaaactggacaagtcgcaagtgcaaagtatgctgggaaaatccgct
aacgaagtcctcaagcaccctcccgtccaagccagaggggcggggcataatcacaaccgc
acccacgtccgtaaaccacacccgccactgccgaccgtcccggcaccggctcaggggtcc
aatcaggatccaccgttctacccgtcgaagaaggccgccacgccgccgccgatgctgcag
ctgctgcccgggtccgagccgaggaaggagctgcctcagtgtgagatcagcgggaaggaa
gccatctcagctttgtccagagccaaaacccgagagtgccggcagaagatcgtgaacgtc
tactgcaaacacaaagagcgagcgctgatgcccgagaaagtgccgcgatactgtccggtc
gaaggtaaggttaacgtgaacgtaccttgggacgaggagcgttcggattctgcagcacgc
acaccggtccggatcgccttcgtcctggtcgtccacggccgagcatcgcgtcagttccag
cgtctcttcaaagccatctaccacacctcccactactactacatccacgttgaccagagg
tccaattacctccacagagaggtgctgctgctggccagccagtactcaaacgtccgtgtg
acttcctggcggatgtccaccatctggggcggggccagcctgctgaccatgtacctacgc
agcatggaagaccttctcaaaatgtccgactggtcctgggacttcttcatcaacctcagc
gctgccgactacccaatcaggaccaatgaacagctggtggctttcctgtccagatacccc
aacatgaacttcatcaaatctcacggcagagacaatgcacgtttcatccgcaaacagggt
ctggaccgtctcttctacgagtgtgacacccacatgtggcgtctcggcgatcgcaagatc
ccagagggcattgcagtggacggaggctctgattggttcctgctcaaccgggcctttgtg
gattatgtggtgaactcccaagacgagctggtcagcagcatgaagcgcttctacgcctac
acactgctgcctgctgagtcttttttccacaccgtgctggagaacagcgcccactgtgag
tccatggtggacaacaacttgcggctcaccaactggaaccgcaaactgggatgtaaatgc
cagtacaagcacattgtggactggtgcggctgctcgcccaacgacttcaagccctcggat
ctgccgcgcttccagcaagcgtccagaccgaccttcttcgcccgcaagtttgaggccagc
gtcagccaggagatcatcagccagctggactcctacctgttcggagcgcacgcctcgggc
acgccgggcctccaggcctactgggagaacgcgtacgagcaggagacggacggcctcgcc
agcgtatcggactcgttggtcagccactaccaggccttcgctcgtatgggactgagccgc
gccgccagctcgctgcagggtcatcccaacgacaatagctgcaggtacgttgccatgagc
aacccggtgtcggttcacttttacttcctgtctgaccagttccaaggttacctggtgcgt
cacatggccaccaaccgagcctccacccagctggagagtctggagacctgggtgacaacc
aaagaccacttcaccctggccagccccccctatcccaacaaccgcctgcagcacatccag
gtggggatggactgggaccctaaggagcgtctcttcaggaactgggggggtcttctgggt
ccccaggacgagccggtggccgtgcagcgctggagccgcggccagaacaacctgaccgcc
accgtggtgtggatcgaccccaccaacgtcatcgccgccacctacgacatcctggtggac
gccaccgccgaggtcacgcactaccggccgccgctcacctcgccgctgaggcccggcgtt
tggacgctgagggttctgcaccactggaccccgctgggccaaaccagcttcatcgtggct
ccgctggagttccacaaacagcaaccgatacagcaagaagcggctctgcgtctgcacggc
ggcccgcccaggaactcctacatggagcagagtttccacggcctcaacccggtgctgcgg
ctgccggtgagcctgggcgccgtggaggaggccgaagccaacgccggcctgacgggggcg
ccgctgcgtcgctggctggaccggctgctggagggacactggtccgccgctgacgtttgc
tccacggggcccagcgcctgccccgtcatgcagcgctgccgtctcaccgcctggagctcc
gccagccccgaccccaagtctgaactgactccacccagagaggacggacgcatcaggtag
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