Scomber scombrus (Atlantic mackerel): 133999090
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Entry
133999090 CDS
T10651
Symbol
sptbn1
Name
(RefSeq) spectrin beta chain, non-erythrocytic 1 isoform X1
KO
K06115
spectrin beta, non-erythrocytic 1/4/5
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04517
IgSF CAM signaling
ssco04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
133999090 (sptbn1)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
133999090 (sptbn1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
ssco04812
]
133999090 (sptbn1)
Cytoskeleton proteins [BR:
ssco04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
133999090 (sptbn1)
Intermediate filaments
Intermediate filament-binding proteins
133999090 (sptbn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spectrin
CH
PH_9
PH
PH_11
CAMSAP_CH
SOS1_NGEF_PH
PMC2NT
Motif
Other DBs
NCBI-GeneID:
133999090
NCBI-ProteinID:
XP_062294223
LinkDB
All DBs
Position
2:36624877..36658894
Genome browser
AA seq
2346 aa
AA seq
DB search
MMTTVAAEFEPMELQQQYSSSDTVNNRWDDEWDNENSSARLFERSRIKALADEREAVQKK
TFTKWVNSHLSRVSCRITDLYMDLRDGRMLIKLLEVLSGEKLPKPTKGRMRIHCLENVDK
ALQFLKEQRVHLENMGSHDIVDGNHRLTLGLIWTIILRFQIQDISVETEDNKEKRSAKDA
LLLWCQMKTAGYSNVNIRNFSTSWRDGMAFNALIHKHRPDLIDFDKLKKSNAHYNLQNAF
NLAEQHLGLTKLLDPEDISVDHPDEKSVITYVVTYYHYFSKMKALKVEGKRIGKVLDNAI
ETEKMIEKYESLASDLLEWIEQTIIILNNRKFANSLTGVQQQLQAFNTYRTVEKPPKFTE
KGNLEVLLFTIQSKMRANNQKVYMPREGKLISDINKAWERLEKAEHERELALRTELIRQE
KLEQLARRFDRKAAMRETWLSENQRLVSQDNFGFDLQAVEAATKKHEAIETDITAYEERV
QAVVAVAKELEVEHYHDIKRITARKDNVIRLWEYLLELLKARRQRLEMNLGLQRVFQEML
YIMDWMDEMKMLLLSQDYGKHLLGVEDLLQKHALVESDIAIQADRVKAVSTNATKFSVND
SGYKPCDPQVIQDRVSHLEFCYQELTQLAAERRARLEESRRLWKFFWEMAEEEGWIREKE
QILSSLEHGKDLTGTLRLLSEQRALEDEMTGRAGHLQHTIAEGQAMVQADHFAASKIQDR
IADLQAQWAALEQLAAARKKRLEEALALHQFQADADDIDAWTLDALRIVSSGETGHDEFS
TQALVRKHKDAAAEVASYRPVIDSLHEQAAALPKEEAESEMVRGRLAGIEERYKEVAELT
KLRKQALQDALALYKMFSEANACEVWIDEKELWLNSMEIPEKLEDLEVVQHRFESLEPEM
NNQASRVAVVNQIARQLIHNGHPSEKDIKAQQDKLNNRWSQFRDLVDQKKESLNSALGVQ
NYHLECNETKSWIKEKTKVIESTQELGNDLTGVMALQRKLTGMERDLAAIEDKLGDLRGE
AQRLAEEHPDQAKAITGRLAEITAVWEEMKDTLKTREESLGEARKLQQFLRELDDFQSWL
SRTQTAIASEDMPNTLAEAEKLMAQHEGIKNEIQNYEEDYQKMRDMGEMVTQGQTDAQYM
FLRQRLQALDTGWNELHKMWENRQNLLSQSHAYQLFLRDTKQAEAFLNNQEYVLAHTEMP
TTLEAAEAAIKKQEDFMTTMDANEDKINSVVEAGRRLASDGNINAERIQERVASIDDRHK
KNREAAVELLMRLKDNRDLQKFLQDCQELSLWINEKMLTAQDMTYDEARNLHSKWLKHQA
FMAELQSNKEWLDKIQKDGTLLVSEKPETEAVVKEKLSALHSMWEELESTTQTKAQCLFD
ANKAELFTQSCADLDKWLGGLEGQIQSDDYGKDLTSVNILLKKQQILENQVEVRQREVVE
LQSQVKALGQEVKDTEEVDGRRQVVEKKFQELLDPLRRRKNLLVASREVHQFNRDVEDEI
LWVQERMAVATSTDHGHNLQTVQLLIKKNQTLQKEIQGHQPRIDDILERSQSLLQDESSD
AEAIRQRLADLQQLWRQLMEEAERRHGRLEEAHKAQQYYFDAAEAEAWMSEQELYMMSEE
KAKDELSAVTMQKKHQIVEQSVEDYAEAVHLLSKTSRGLVSDGHPESERISMRQSQVDKL
YAGLKDLSEERRGKLDERLRLFQLNREVDDLEQWIAEREVVAGSHELGQDYEHVTMLQER
FREFARDTGNIGQERVDSVNRQADELINAGHGDAATVAEWKDGLNEAWADLLELIDTRTQ
ILAASFELHKFYHDAKEILGRIVDKQKKLPEEVGRDQNTVETLQRMHTTFEHDIQALGTQ
VRQLQDDATRLQSAYAGDKADDIQRRESEVLEAWRSLLEACDGRRLRLMDTGDKFRFFSM
VRDLMLWMEDVIRLIEAQENPRDVSSVELLMNNHQGIKAEIDARNDSFTSCIELGKSLLA
RKHYASEEIKEKLLQLTDKRKDMIDKWEDRWEWLRLILEVHQFSRDAGVAEAWLLGQEPY
LSSREMGQSVDEVEKLIKRHEAFEKSAATWEERFSALERLTTLELLEVRRQQEEEERMRK
PPTPEPAVIEQEEEPLQSGVVNQNGLPSDQDSPRDGVDGVELVNGVVERSSKEPSPTPSP
TSGRKSKTSQSSTLPSRNQDSGSQLEGLLHRKHEWEGQNKKASNRSWHNVYCVITNQELG
FYKDSKAASQGVPYHGELPVSLKEATCDIASDYKKKKHVFKLRLTDGNEYLFQAKDEEEM
STWIQAILNAGAADVQSSNPGTPASGRAQTLPAAVTLATESSPGKREKDKEKDKEKRFSL
FSKKKQ
NT seq
7041 nt
NT seq
+upstream
nt +downstream
nt
atgatgacgacggtggcggcggagttcgagcccatggagctgcagcagcagtacagcagc
agcgacacggtcaacaaccgctgggacgatgagtgggacaacgagaacagctcggcccga
ctgttcgaacgctcacgcatcaaagcgctcgcagatgagcgagaggcggtgcagaagaag
acgttcactaagtgggtgaactctcacctgtccagagtctcctgcaggatcacagacctg
tacatggacctgagggacggacgcatgctcatcaagctgctggaggtcctgtcaggagag
aagctgccgaagcccaccaaaggccggatgcggatccactgcctggagaacgtggacaaa
gctctgcagttccttaaggagcagcgggttcacctggagaacatgggatcccacgacatc
gtcgacggcaaccaccgactgacgctgggcctcatctggaccatcatcctccgcttccag
atccaggacatcagtgtggagactgaagacaacaaagagaagagatcagctaaagatgct
ctgctgctctggtgtcagatgaagacggccgggtattcaaacgtcaacatccgcaacttc
agcaccagctggagagacggcatggccttcaacgccctcatccacaaacacagacctgat
ctgatcgactttgacaaactgaagaagtccaacgctcactacaacctgcagaacgccttt
aacctggcagagcaacacctgggcctgaccaagctgctggacccagaggatatcagtgtg
gaccatcccgatgagaagtcagtcatcacctacgtggtgacgtactatcattacttctcc
aagatgaaagctctgaaggttgaaggaaaacgtatcggaaaggtgttggataacgccatc
gagacggagaagatgatcgaaaagtacgagtctctggcgtcggacctgctggagtggatc
gagcagaccatcatcatcctcaacaacaggaagttcgccaactctctgacgggagtccag
cagcagctgcaggcgttcaacacctaccggaccgtggagaaacctccaaagttcacagag
aaaggaaacctggaggttctcctcttcaccattcagagtaaaatgagagcgaacaatcag
aaagtttacatgccgcgagaaggaaaactcatctcagacatcaacaaggcctgggagagg
ctggagaaggcggagcatgagagggagctggctctgaggacggagctgattcgtcaggag
aaactggagcagctggcgagacgtttcgaccgcaaggcggcgatgagagagacttggttg
agcgagaaccagaggctggtgtcacaggacaactttggttttgacctgcaggccgtcgag
gcggccactaagaagcacgaagcaatcgagacggatattacggcatacgaggagcgtgtg
caggccgtggttgctgtggcgaaggaactggaagtggagcattaccacgacatcaaacgc
atcactgccaggaaggacaacgtgatccggctgtgggagtacctgttggagctgctgaag
gcccgcaggcagaggctggagatgaacctgggcctgcagagggtcttccaggagatgctc
tacatcatggactggatggacgagatgaagatgctgctgctgtctcaggattatgggaag
catctgctgggcgtggaggacctgctgcagaaacacgctctggtggagtccgacatcgcc
atccaggctgacagggtgaaggcggtttccaccaacgccaccaagttctccgtgaacgac
agcggctacaagccctgtgaccctcaggtcatccaagaccgggtatcccacctcgagttc
tgctaccaggagctgacccagctcgctgcagagcgccgagcccgcctggaggagtcccgc
cgcctctggaagttcttctgggagatggccgaggaggagggttggatccgtgagaaggag
cagatcctgtcctctctcgagcatggcaaggacctgacggggacactgcgcctgctcagc
gagcagcgtgccctggaggacgagatgactggccgcgccggccacctccagcacactatc
gcagagggccaggccatggtgcaggctgaccacttcgctgcctcaaagatccaggatcga
atcgctgacctgcaggctcagtgggcagcactggagcagctggcagcagcgaggaagaag
aggctggaggaagctctggcgctgcaccagttccaggccgacgcggacgatatcgacgcc
tggacgctggacgccctgcgtatcgtctccagtggagagacgggccacgatgagttctcc
acccaggctctggtaaggaagcacaaagacgcggcagcagaggtggcaagctaccggccg
gtcatcgactcgctccacgagcaggccgccgcgctgcctaaagaggaggcggagtcagag
atggtgcgtgggcggctggcgggcattgaggagcgctacaaggaggtggcggagctgacg
aagctgaggaagcaggcgttgcaggacgctctggctctctacaagatgttcagcgaggcc
aacgcctgcgaggtttggatcgatgagaaggagctgtggctgaacagcatggagatcccc
gaaaaactggaggacctggaggtggtacagcacagatttgagagtctggagccagagatg
aacaaccaggcgtctcgtgttgctgtggtgaaccagatcgcccggcagctgattcacaac
ggtcacccgagcgagaaggacatcaaggcccagcaagacaaactcaacaacaggtggagc
cagttccgtgacctggtggaccagaagaaggagtccctgaactctgctctgggtgtgcag
aactaccaccttgaatgcaacgagaccaagtcctggatcaaagagaagaccaaggtgatc
gagtccacgcaggagcttggcaatgacctcaccggcgtcatggccctgcagcgcaaactg
accggcatggagcgcgacctcgccgccatcgaggacaagctgggcgacctgcgaggtgag
gcccagaggctggcagaggaacacccggaccaggccaaggccatcacaggccgcctggct
gagatcaccgccgtctgggaggaaatgaaggacactctgaagacccgcgaggagtctctg
ggagaagccaggaagctgcagcagttcctgcgtgagctggatgacttccagtcctggctg
tcccgcactcagaccgccatcgcctccgaggacatgcccaacacgctggctgaggccgag
aagctcatggcccaacatgaaggtatcaagaatgagatccagaactacgaggaggactac
cagaagatgcgggacatgggggagatggtgacgcagggccagacggacgcgcagtacatg
ttcctgcgacagcggctgcaggcgctcgacaccggctggaacgagctgcacaagatgtgg
gagaaccggcagaacctgctgtcccagtcccacgcttaccagctgttcctcagggacacc
aagcaggccgaggccttcctcaacaaccaggagtacgtcctggctcacaccgagatgccc
accactctcgaggccgccgaggccgccatcaaaaagcaggaagacttcatgaccaccatg
gacgccaatgaggataagatcaacagtgtggtggaagccggcaggcggctggcgagcgac
ggaaacatcaacgccgaacgaatccaggagcgagttgcctccatcgacgacagacataag
aagaacagggaggctgcagtggagctgctgatgagactgaaggacaacagagacctgcag
aagttcctccaggactgccaggagctgtctctgtggatcaatgagaagatgctaacagct
caggacatgacctacgacgaggcccgaaacctgcacagcaagtggctgaagcaccaggcc
ttcatggccgagctgcagtccaacaaggagtggctcgataagatccagaaggatggcacg
cttctggtgtcggagaagccggagacagaggcggtggtgaaggagaagctgtcggcgctg
cacagcatgtgggaggagttggagtccaccacgcagaccaaagctcagtgtctgttcgac
gctaacaaggccgagctgttcacgcagagctgcgccgatctcgacaaatggctcggcggc
ctggagggtcagatccagtccgacgactacggcaaagacctgacctccgtcaacatcctg
ctcaaaaaacaacagatcctggagaaccaggtggaggtgcgtcagcgtgaggtggtggag
ctgcagagccaggtgaaggcgctcggtcaggaggtgaaggacactgaagaggtggacggc
cggcggcaggtggtggagaagaagttccaggagctgctggatccgctgcgccgccgcaag
aacctgctggttgcatccagagaggttcaccagttcaaccgggacgttgaggacgagatc
ctgtgggttcaggagaggatggccgtcgccacgtccaccgaccacggacacaacctgcag
accgtccagctgctcatcaagaagaaccagactctacagaaggagatccagggccatcag
cctcgcatcgacgacatcctggagcgcagtcagagcctcctgcaggacgagtcgtccgac
gccgaggccatcaggcagcggctggccgacctgcagcagctgtggcggcagctgatggag
gaggcggagcggcgccacggccggctggaggaggcgcacaaggcccagcagtactacttt
gacgcggcggaggcggaggcgtggatgagcgagcaggagctgtacatgatgtcagaggag
aaggcgaaggacgagctgagcgccgtcaccatgcagaagaaacaccagatcgtagagcag
tcggtggaagactacgctgaggccgtccacctgctgtccaagaccagcagaggactggtg
tctgacggacacccagagagtgagcggatcagcatgcggcagtctcaggtggataagctg
tacgccgggctgaaggacctatcagaggagaggaggggcaaactggacgagagactccgc
ctcttccagctgaaccgagaggtggacgatctcgagcagtggatcgctgagagggaagtg
gtggccgggtcccacgaactgggccaggactacgaacacgttactatgttgcaggagcgt
ttccgggagttcgctcgggacaccgggaacatcggccaggagcgcgtggactctgtgaac
cggcaggcggacgagctgatcaacgccgggcacggggacgcggccacggtggcggagtgg
aaggacgggctgaacgaagcctgggccgacctgctggagctcatcgacacccggacgcag
atcctcgctgcctccttcgagctgcacaagttctaccacgacgccaaagagatcctggga
cgcatcgtggacaagcagaagaagctgccggaggaagtgggccgcgaccagaacacggtg
gagacgctgcagaggatgcacactaccttcgaacacgacatccaggccctgggaacacag
gtgaggcagctgcaggatgacgcgacgcgcctccagtcggcgtacgccggcgacaaagcg
gacgacatccagcggcgtgagagcgaggtgctggaggcctggaggagcctgctggaggcg
tgcgacggccgccggctccgcctcatggacaccggagacaagttccgcttcttcagcatg
gtccgagacctgatgctgtggatggaggacgtgatccggctcatcgaggcccaggagaac
cccagggatgtgtcctcggtggagttactgatgaacaaccatcagggaatcaaagctgag
attgacgctcgtaacgacagtttcacttcctgcatcgagctcgggaagtcgctgctcgcc
aggaaacactacgcctcggaggaaattaaggagaagctgctgcagctgaccgataaaagg
aaagacatgatcgataagtgggaggatcgatgggaatggctgcgactcatcctggaggtg
caccagttctcccgggacgcgggcgtggccgaggcctggctgctgggtcaggaaccgtac
ctgtccagcagggaaatgggtcagagcgttgacgaagtggagaagctcatcaaacgccac
gaagccttcgagaagtctgccgccacctgggaggaacgcttctccgccctggagaggctg
actacgctggaacttctggaggtgaggaggcagcaggaggaagaggagaggatgaggaag
ccaccgactccagagccggctgtgattgaacaggaagaagaaccgctgcagagcggagtc
gtcaatcagaacggactgccatcggaccaggactctcctcgggacggcgttgacggtgtc
gagctggtgaacggtgttgtggagagaagctccaaggagccgagtccgactccgtcgccg
acctccggcaggaagagtaaaaccagccagtctagcacgctgccctccaggaaccaggac
tctggatcccagctggaaggactcctgcaccgcaaacacgagtgggagggccagaacaag
aaggcgtccaacaggtcgtggcacaacgtgtattgcgtcatcaccaaccaggagctgggt
ttctataaggacagcaaggcggcgtctcagggcgtcccgtaccacggcgagctgcccgtc
agcctgaaggaggcgacctgcgacatcgcctccgactacaagaagaagaaacacgtcttc
aagctcagactcactgatggaaatgaatatctgttccaagccaaagatgaagaggagatg
agcacctggatccaggccatcctgaacgccggcgccgccgacgtgcagagcagcaacccg
ggaacgccggcgtccggccgagctcagacgctgccggctgccgtcacgctcgccaccgag
tcgagtcccggaaagagagagaaggacaaagagaaggacaaagagaaacgcttcagcctg
ttcagcaagaagaagcagtaa
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integrated database retrieval system
