Scomber scombrus (Atlantic mackerel): 133999129
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Entry
133999129 CDS
T10651
Symbol
cpsf4
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 4
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
133999129 (cpsf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssco03021
]
133999129 (cpsf4)
03019 Messenger RNA biogenesis [BR:
ssco03019
]
133999129 (cpsf4)
Transcription machinery [BR:
ssco03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
133999129 (cpsf4)
Messenger RNA biogenesis [BR:
ssco03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
133999129 (cpsf4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
Torus
zf-CCCH_3
zf-CCCH_2
zf-CCHC
zf-CCCH_4
zf-CCHC_3
Nab2-like_zf-CCCH_
zf-C3H1
Motif
Other DBs
NCBI-GeneID:
133999129
NCBI-ProteinID:
XP_062294281
LinkDB
All DBs
Position
18:complement(20537667..20541281)
Genome browser
AA seq
266 aa
AA seq
DB search
MQDLLATVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGSAVCEFFMRAACIKGGMCPFRHI
SGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESK
IKDCPWYDRGFCKHGPDCRHRHTRRVICVNYLVGFCPEGKSCKFMHPRFELPMGASEQPP
LPQQAQNQTKPVPTIGRSSLSLIQLTNSSPGQRPQNHMMNTGMQQNNMGSNRGPRPLDQV
TCYKCGEKGHYANKCTKGHLAFLSGQ
NT seq
801 nt
NT seq
+upstream
nt +downstream
nt
atgcaggatttactggccaccgtggatcacatcaagtttgatctggagatcgctgtggag
cagcagctgggggcacagccgctacccttccccggcatggacaagtccggctctgctgtg
tgtgagttcttcatgagagcagcgtgtataaaaggcgggatgtgtccgttccgtcacatc
agcggagagaagacggtggtgtgtaagcactggctcagaggactgtgtaagaagggagac
cagtgcgagtttctccacgagtacgacatgaccaagatgcccgaatgctacttctactct
aagtttggtgagtgcagcaacaaggaatgtccgttcctgcacatcgatccagagtcaaag
atcaaagactgtccctggtacgaccgaggcttctgcaaacacggtcccgactgcaggcac
agacacacaagaagggtgatctgtgtgaattacctggttggcttctgtccagaaggaaaa
tcctgtaaatttatgcatcctcgtttcgagttacccatgggtgcttctgaacagcctcct
ctaccgcaacaagcccagaaccagacaaagcccgtgcccaccatcggacgctcctcgctc
tctctaatccagttgaccaactccagtccaggtcagcggccgcaaaaccacatgatgaac
accggcatgcagcaaaataacatgggttccaacagagggcctcgaccgctggaccaggtc
acctgctacaagtgtggagagaagggtcactatgccaacaaatgcaccaaaggccacctg
gcattcctgagcggacagtaa
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integrated database retrieval system
