Scomber scombrus (Atlantic mackerel): 133999134
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Entry
133999134 CDS
T10651
Symbol
top3a
Name
(RefSeq) DNA topoisomerase 3-alpha isoform X1
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03440
Homologous recombination
ssco03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
133999134 (top3a)
03460 Fanconi anemia pathway
133999134 (top3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ssco03032
]
133999134 (top3a)
03400 DNA repair and recombination proteins [BR:
ssco03400
]
133999134 (top3a)
Enzymes [BR:
ssco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
133999134 (top3a)
DNA replication proteins [BR:
ssco03032
]
Eukaryotic type
DNA Topoisomerases
133999134 (top3a)
DNA repair and recombination proteins [BR:
ssco03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
133999134 (top3a)
FA (Fanconi anemia) pathway
133999134 (top3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_GRF
Toprim
Zn_ribbon_Top1
Zn_ribbon_GRF_2
zf-C2H2_10
Motif
Other DBs
NCBI-GeneID:
133999134
NCBI-ProteinID:
XP_062294286
LinkDB
All DBs
Position
18:20564774..20585227
Genome browser
AA seq
1036 aa
AA seq
DB search
MLALNLLGRYLLRSGLHWPDVRRRFVCTAQISRCQDRPQPADMLRGRGKITRVLCVAEKN
DAAKGISEIMSNGRSRRREGLSKFNKIYEYEYHLFGQNVTVTMTSVSGHLLGQEFKAPYQ
KWHSCNPVLLFDAEVEKYCPDNMVQIKRTLEKEVRQCQALVIWTDCDREGENIGFEIIDV
CKAVKPNLQVFRAKFSEITPNSIQRACETLIEPDSNISDAVDVRQELDLRIGASFTRFQT
LRLQKIFPESLANQLISYGSCQFPTLGFVVERFKAIQAFIPETFYKIKVMHEVEEDVVEF
SWTRNRLFNHTACLVLYQICMEDPIATVTSVTSKPKSKWRPLPLDTVEMEKLVSRKLKIN
AKETMKIAEKLYTKGFISYPRTETNSFPASLALAPLVELQTHSQDWGTFAQRVLEQPGGP
NPRQGKNSDEAHPPIHPTKFTNTLQGNESRLYEFIVRHFLACVSQDAVGKETVVDIEIAR
EKFSASGLMIIARNYLDVYPYDRWSTKVIPVYEQGSQFQPSAIEMVDGQTSPPQLLTEAD
LISLMEKHGIGTDATHADHIETIKSRMYVGLTADQRFLPGELGMGLVEGYNSMGYEMSKP
NLRSELEADLKEVSVGRKDKLNVLRHHIQKYKTVFIESVRKAKKLDEALSPYLGAALEIT
EAEQQQDMDIPLPVRKCPNCGRDMVLKKKKEGNSKYLSCVGFPDCKTAVWFPDTVLEVSR
DSSICPTCQPHPVHMLKFNFRRGSLPPMMPLEFVGCIGGCDETLREVLDLKYLRAGGGGG
GGGGGGGGEDRGPPVPRPSRAEPPRAPRSNPRPSLPPVPSWAPQPRPPPGGGGISADTNS
DVIVCNCGQDALLLTVRKDGPNQGRQFYKCNGGSCNFFLWADQPSQQGPPQSRGPALPPP
MTSQPPRPSLGFRNNPPGVGRDQVGSAGGQGDQIMCNCNEAAVTRTVQKDGPNKGRTFHT
CGKPREQQCGFFQWADENVPPPGGFGVTFNGGGDGGKKGRRITGDAGGNRPPAAKKPRTC
GICHLPGHTRVTCPQR
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atgctggcactgaatctcctcggtagatatttgcttcgctcgggactacactggccagac
gtccggaggaggtttgtgtgtacggcgcagattagccggtgtcaggaccgaccgcagccg
gcagacatgctccggggccgtggtaaaatcacccgggtcctctgcgtcgccgagaagaac
gatgcagccaaaggcatctcagagatcatgtccaacgggaggtccaggaggagagaaggg
ctgtcaaagtttaacaaaatctatgaatatgaatatcatctctttggtcagaatgtgacg
gtaacaatgacgtcagtatcaggccatttactgggtcaagagtttaaagcgccataccag
aaatggcacagttgtaatccggtgctgttatttgatgctgaagtagagaagtactgtcca
gataacatggtgcaaataaagcggacattggagaaagaggtgaggcagtgccaggcctta
gtcatctggactgattgtgacagagagggagaaaacatcggctttgaaatcatagatgtc
tgtaaagcagtgaagccaaatttacaagtcttccgggcaaagttttctgagatcacccca
aactccatacagagagcttgtgagactctgattgagccggattctaacatcagcgatgcc
gtggatgtccgccaggagctggacctgcggataggtgcatccttcactcgcttccagacc
cttcgcctgcagaagatctttccagagtctctggccaatcagctgatttcatacggcagc
tgtcagtttcccactcttggctttgtggtggagcgcttcaaagccatccaggctttcata
cctgagactttctacaagatcaaagtgatgcacgaggtggaggaggacgttgtagagttc
agttggacgagaaaccgactcttcaaccacacagcttgcctggtgctgtaccagatatgc
atggaggatcccatagcaacagtcacctcagtaaccagcaagcccaagagcaagtggagg
ccgctgcctttggacacagtggagatggagaaactggtatctcggaagctgaaaataaat
gccaaagagaccatgaaaattgcagaaaagctctacactaaagggtttatcagttacccc
cgtacagagacaaacagcttccctgcaagcctggctctcgcccccctggtggagctgcag
acgcatagtcaggactgggggacattcgctcagcgggtgctcgaacagcccgggggtccc
aacccgcgacagggcaagaactctgacgaagcccatccccccatacaccccaccaagttc
accaacacactgcagggcaatgaaagtcgtttgtacgagttcatcgtccggcacttcctg
gcttgtgtatcccaggatgctgtggggaaggagactgtggtggacatagaaatcgcccgg
gagaagttctctgcatcgggactcatgatcattgcaaggaactacctggacgtttacccg
tacgacaggtggagcaccaaggtgattccagtgtatgagcaaggctcccagttccagcct
tctgctatcgagatggtggacggacagacgagtcctccgcagctgctcactgaagccgac
ctcatttcactgatggagaagcacggcatcggcacagatgcaacacacgcagatcacatc
gagactataaagagtcgcatgtacgtgggattgacagcagaccagaggtttctccccgga
gagctcgggatggggctggtggagggttataactccatgggctatgagatgtctaaacca
aacctacgctctgaactggaagcggacctcaaggaggtatcagtgggaaggaaggacaaa
ctgaacgtgctgcggcaccacatccagaaatacaagactgtcttcattgaatctgtcagg
aaggcaaagaagttagatgaagccctgtcgccgtatctgggtgcagctctggagatcact
gaagcagagcagcagcaggacatggatatccctttgccggtcagaaagtgccctaactgc
gggcgggacatggtactgaagaagaagaaggaaggaaacagtaagtacctgtcctgtgtg
ggcttcccggactgtaagactgcagtgtggttccctgatacagtgctggaggtcagcaga
gatagcagcatctgtcccacctgtcagccacaccctgttcacatgttaaagttcaatttc
cgaaggggcagcctacctcccatgatgcctttagaatttgtcggctgcatcggcggatgc
gacgagacactcagagaggtgctggacctgaaatacctccgagcagggggaggtggaggt
ggaggtggaggtggaggtggaggagaggaccgtggtccaccagttccaagaccctccaga
gcagagccacccagagccccgagatcaaatcctcgaccttcccttccacctgtcccctcc
tgggccccgcagccaaggcctccaccaggtggcggcggcatcagcgcagacaccaacagt
gatgtcattgtgtgtaactgtggtcaggatgcgctcctcctgaccgtgcgcaaagacggt
cccaaccaagggcgccagttctacaaatgcaacggcgggagctgcaacttctttctgtgg
gcagatcagccgagtcagcaggggccaccgcagagtcgagggcctgcgctgccaccgcca
atgacctcccaacctccgaggccttcactggggttcaggaacaacccccccggagtaggc
agggaccaggttgggtctgcgggaggacaaggggaccagattatgtgtaactgtaatgaa
gcagcagtgacacgcacggtgcaaaaagacggtccaaacaagggtcgaacgttccacacc
tgcgggaaaccgagagaacagcagtgtggcttcttccagtgggctgacgagaatgtaccg
ccaccaggtggttttggtgtcacatttaacggcggtggagacggagggaagaagggaagg
aggataacgggagatgctggcggtaacagaccccccgctgctaagaaaccacgtacctgc
ggcatctgccatttgccgggacacacccgagtcacctgcccccagcggtga
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integrated database retrieval system
