KEGG   Scomber scombrus (Atlantic mackerel): 133999178
Entry
133999178         CDS       T10651                                 
Name
(RefSeq) trinucleotide repeat-containing gene 6B protein-like
  KO
K18412  trinucleotide repeat-containing gene 6 protein
Organism
ssco  Scomber scombrus (Atlantic mackerel)
Brite
Messenger RNA biogenesis [BR:ssco03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     133999178
Chromosome and associated proteins [BR:ssco03036]
 Eukaryotic type
  Gene silencing
   piRNA pathway
    133999178
SSDB
Motif
Pfam: TNRC6-PABC_bdg RRM_occluded RRM_1
Other DBs
NCBI-GeneID: 133999178
NCBI-ProteinID: XP_062294347
LinkDB
Position
18:complement(21010066..21026879)
AA seq 2109 aa
MEDKKKKKEDKKKRETSQKVPEPKIKVPESAKPSCTQPLATPGSVSPSPGPIAPSSPSPG
AAGVSAQVPPGGGNNAKQRTAVANGQPSSPSGSQTSQQQRYMSREVPPRFRCQQDHKVLL
KRGQPPLSSMLLGGGGGEGGAGGVGVGSGWGAASPLSSQGSDNPNANTAGATDSNLGSSS
PSPPTSSSSSLCVAGLSPSSTTTTTSTYANSTWGAGSVSQSSSQGCGKVIVDGTDLEDWP
SILGGAKLNSDGAAGGAQEQDCPGNNNNSSASWSERNIQQKGGAAVGGGGAGNMDNPSPP
RSSPLSSSSSLNECVQSSGGVWGSSTSSQVEAGLGSAAFYNSKVSHLLPGPQESPVGGNS
SVPGANFNPNVNPSAWPALVQGGTPTSASDGLPLHASITSASSFSASTTLITTHSLSSVN
QTGLHRQHTDTAVVTRSGEQQQQHLGNPGLELGSDGGAGGVGTGPGPNQEGGSERESVTG
VEEGSGNLSGSSSSSSAASSSWRSMPPVSSDLSAGVSQADGWRGGGTGAQGQEGNVWGFG
SQADKAGWGGGNDGGSNTPVVSQGAWEDGSSEAEWGGTAGGVSSSNLAIGSGRGGDGSSN
SSSSGGSAGVSGGSVLPDSASPKFATITKAWDNQKGMESGDRAVGEWDGAGGGGQGGGTG
GGGPSSSSGGGSIAGSSGGGSGSGPKQEQASSVHNHSQQTSNAEVALLSMLNRSDLDPRV
LSNTGWGQTQIRQNVAWDLDTKAGAAKRNERSTSSSSSAFSSGTMNTTTSRGPGYPSNTS
SITNDPSAGSHSTSMNSGPASVRDGWEGGAPQSTCGSHMPGSTIKKPGTPEDDMEGNQAK
AARGWGELPPENQGKGWGTEEQQWGDRGGGGGNWRDCGEQGSGWGDGPEEKGTGGWKGTG
RGEVSGWGGKSGGGGGGGGDWGQRDFKETPGGGWGDGRNRGGSNSDEGSSWGNLDEGGSQ
RGGWGGGDVGGGKSHQDWGSAKPHAAAAAAAAAAAAAAAAAAQIPNSQVATMKAPNQQQH
QSQGQQPPGGPTQGGWNSRPSVGGGGTPSKNQNQSSGWTSGPIPQISGGGADTLESSGWE
EPSPQSISRKMEIDDGTSAWGDPTRYNSKNVNLWDKKSATPGQSHSQQAPPPSMQQQPPR
RQQAMQHSRDTNPSNSAVGPGMWGGAQSVDNGTTAWGQTSETAIGWSEPDEPGKTSGWGN
PSPNPGKPVTKSMEGWGGKGEGSVAASRHPSWDEEDDGSGGVWNSTGSQGSSSSFNSGGW
GQTHGGKRGNMKGGGGESWMNPVSRQFSNMGLLGDDPSVDKKMEGDKRGITDYNGEMRRG
GRGGGGYRMPSSKDMGPAEMGPYGEKMGGHGVYVGSGGGMPQPRGMHQPGMHPMNPSPGL
RAQVPHQYLSAQVPGPMLKQMPSPGGSVGGVVGGVGGVGGVGGVGGGVGGVGGVGGVGGV
SGVGSVGGVGGVGGAGGGMFPPQISPQQLAMLSNIYPHMQQFHLACQLLLQQQQQQQQQQ
QLLQNQRKFPQPQPLRQQPDPQQLARIMAILQQQRQHGGVGGGAAAGGGSKLSPSHLGLS
KQPMVDPLPHPGMGGPLSDLHAKTQGMYSGLAPGSNLAGLELSPMMGGMKDTGGQQSRFK
WMMEGHSPAPSPPDTNLHKNGPLPSAIKVRGGSPYSQYDMLGSEGLGIPPQSSADNWHRT
PGSKMGNKPATSSWPPEFQPGVPWKGIQSSGDPESDPYMTPGSVLGSPGPQTLNDSDHQL
LRDNIGPNPSLNTSLPSPGAWPYSASDSPLSNAHSTGKYSEYKPSWPPEPIGQNKLWKTN
RTSSQLPRPPPGLTNQKQASPSPWGSGGPRLARGWGGGGINQESRFGPGSAWSDGVASRG
SCWLLLSNLTPQIDGSTLRTICMQHGPLLTFHLGLTQGSALIRYSSRQEAAKAQGALHMC
VLGNTTILAEFVSEEEVARYFAHSQAGGAEGASSGGAAAGGTQGSSGTGTAVASSGGSSP
GSERAAAGTTSGGNGNGGGGGESGGAGLGSVRSPGSGWQSLDGTGSSSETSSAQGPGLGI
FSQWSTNGAGEGGGVGGVESGRSGLWGGMTAGYPSSSLWGAPQIEERHQMDSPAALLPGD
LLGGGADSI
NT seq 6330 nt   +upstreamnt  +downstreamnt
atggaagacaagaaaaagaagaaagaagataaaaagaaaagggaaacctctcagaaggtg
ccagaaccgaaaatcaaagtgccagaatcagccaagccctcctgtacccagccgctcgcc
accccaggctcagtgtcccccagccctggccctattgccccctcatcccccagtcctggt
gcagctggggtttctgcacaagttcctcctggtggtgggaacaatgcaaagcagcggact
gctgtggccaacggacagccctcctccccctctggaagccagacctcccagcagcagcga
tacatgtccagagaggtaccaccaagatttcgctgccagcaggaccacaaagtgctactg
aagaggggccagccaccgctgtcctccatgctgctggggggaggaggaggggaagggggt
gcaggaggggttggagtaggcagtggctggggagccgcctcacctctttcctcacaggga
tcagataaccccaatgcaaacacagctggagccacagattccaacctgggttcatcctct
ccttcaccccccacctcctcgtcatcctcattatgtgtcgctggtctgtcaccgtcttct
actactactactacttcaacttatgcaaattccacatggggggcaggctctgtcagccag
tcctcctctcagggctgtgggaaggtgattgtggatgggactgacctggaggattggcct
agcatcctaggcggggccaaattgaattctgatggggctgcgggaggagcgcaggagcaa
gactgccccggtaacaacaacaacagtagtgcctcatggagcgagagaaacatccagcag
aaaggaggagcagcagtaggaggaggaggagcagggaacatggacaatccctccccgcct
cgttcttctcccctatcctcctcgtcttcgcttaatgaatgtgttcagtcaagtggtggt
gtgtggggttcctccacctcctctcaggtggaggcagggctgggatcagcagcattttac
aattccaaagtctcccatcttcttcctgggcctcaggagagccctgtaggtggtaacagc
agcgtccctggtgccaatttcaaccccaacgtgaacccctccgcctggcccgccctagta
cagggcgggacaccaacttcggctagcgacggccttcctctacacgcgtccattacatca
gcttcctcgttctctgccagcaccaccctcatcaccactcactctctttcatctgtgaat
caaactggcctccataggcagcacactgacacagctgtggtaaccaggagtggagaacag
cagcagcagcacttgggtaacccaggactggagctcggttcagacggaggtgcgggagga
gtagggacaggaccaggaccaaatcaagagggtggcagtgagagggagagtgtcactggt
gtcgaagaagggagtgggaatctctctggctcttcatcctcttcctctgctgcctcttcg
tcttggagatccatgcctccagtgtcctctgacctcagtgcaggtgtctcacaggcagat
gggtggaggggaggagggactggagctcaagggcaggaagggaatgtatggggctttggt
agccaggctgacaaggcagggtggggtgggggaaatgacggtggctcaaataccccagtg
gtatctcagggagcgtgggaagacgggagttcggaagcagagtggggcggcacagcggga
ggtgtaagttcaagtaacttagcaataggaagtggtagaggaggagacggaagcagcaac
agcagcagtagtggaggcagcgcgggtgtcagcggcggcagcgttttgccggactctgcc
tcaccaaagtttgcaactataacaaaagcttgggacaatcagaaagggatggagagtggg
gatagggcagtcggggagtgggatggagcaggaggagggggacagggtggaggcactgga
ggtggaggaccttcatcctctagtggaggagggtccatagctggaagcagtggaggaggg
agtggtagcggaccgaagcaggagcaagcctcgtctgtgcacaaccactcccagcagacc
tccaatgctgaagtggccttactgagcatgctcaatcgatctgacttggatcccagggtt
ctgtctaacacaggctgggggcagacccagattcgacagaatgtggcctgggacctggac
accaaggcgggagcagccaaaagaaatgaaagaagtacttcttcttcttcctctgcattc
tcttcaggaaccatgaacactaccactagtcgcggtcctgggtacccgtctaacaccagt
tcaataactaatgatccatctgctggcagtcactcgaccagcatgaactctggccccgct
tcagtgagggatggttgggagggcggtgctccacagtccacttgtggttctcacatgcct
ggcagcactataaagaagccaggaacaccagaagatgatatggagggcaaccaggcaaag
gcagctcgaggatggggtgaactcccacctgaaaaccagggcaaaggatgggggactgaa
gaacaacaatggggggatcgaggaggagggggagggaactggagagactgtggagaacag
ggtagtgggtggggtgatggtccagaggaaaaagggacagggggatggaaggggacagga
agaggagaagtaagtggttggggagggaaaagtggaggaggaggaggaggaggaggagac
tggggacaaagagactttaaagagacacctggaggtgggtggggagacgggcgtaacaga
ggtggaagcaactctgatgagggatcttcctggggtaatttggacgaagggggatctcag
cgtggaggatggggagggggagatgtgggtggaggcaaatcccaccaggactgggggagc
gccaagccccacgcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagca
gcagcacagataccaaacagccaagtggcaacaatgaaagccccaaatcaacagcagcac
caatcacagggccagcagccaccaggaggacccacacaaggagggtggaacagccggcct
agcgtcggaggtggaggcacaccatccaagaatcagaaccaaagttcgggctggacctcc
ggccctatcccccaaatctccggtggcggggctgacaccctggagtcaagcggctgggaa
gagccgtctccccagtccatcagccgcaaaatggaaatcgacgacggcacttcagcctgg
ggggacccaacccgctacaacagcaagaatgtgaacctgtgggacaaaaaaagcgctacg
cctggccaaagtcacagtcagcaggccccaccaccgtccatgcagcaacagccacctaga
aggcagcaggcgatgcagcacagcagggacacaaaccctagcaactcagcagtcggcccg
ggtatgtggggaggtgcacaatctgttgataatggtaccactgcttggggccagacatcg
gaaacagcaatagggtggagtgaaccagatgaacccggaaaaacttctggctgggggaac
ccatcacctaaccctggtaaacctgtcacaaagtcgatggaaggctggggcgggaaggga
gagggatctgtggccgcctcccgacaccccagctgggacgaggaagatgatggtagcgga
ggggtctggaacagcactggctcccagggaagcagctcttcctttaactccggaggctgg
ggtcagactcacggaggaaagagaggcaacatgaagggtggaggaggcgaaagctggatg
aacccagtgtcacgtcagttttcaaacatgggtctcctgggtgacgacccaagtgttgat
aagaagatggaaggagacaagagaggaataactgactataatggagagatgaggagggga
ggacgaggtggaggaggttaccggatgcctagttccaaagacatgggtcctgctgaaatg
gggccctatggtgaaaaaatgggtggccacggagtatatgttggcagtggtggagggatg
cctcagcctcgagggatgcaccagcctggcatgcatcccatgaacccttccccagggtta
cgtgctcaagtgcctcatcagtacctgtctgctcaggtgccgggtcctatgctgaagcag
atgccctctcctggcggcagcgtgggtggagtggttggaggagtaggaggagtaggagga
gtaggaggagtaggaggaggagtaggaggagtaggaggagtaggaggtgtgggaggtgtc
agtggcgttggaagtgtcggtggggtcggcggtgttggcggtgctggcggaggaatgttc
cctcctcagatatccccacagcagctagcaatgctcagcaacatttacccccacatgcag
cagtttcatctggcttgtcaactcctgctacaacagcagcaacagcagcagcagcagcag
cagctcctgcagaaccagaggaagttccctcaacctcagcctctcaggcagcagccagac
ccacagcagctggcaaggattatggctattctgcagcagcaaagacagcatggaggagtt
ggaggaggagcagcagcaggagggggctccaaactctctccgtctcacctgggcctatct
aaacagcccatggtagacccccttccgcatcccgggatgggcggccccttatcagacctt
catgccaaaacccaagggatgtactctgggctcgcccctggcagtaacctggcaggattg
gagctcagtcccatgatgggagggatgaaggacacaggaggacagcagtcccgcttcaaa
tggatgatggagggacattctccagctccatctccacctgacacgaaccttcacaaaaat
ggccctttacccagcgctataaaagtgagaggaggatccccttactcccagtatgacatg
ctgggcagtgaaggtttaggtattccccctcaaagctcagcagacaactggcaccggacc
cccgggagtaaaatggggaacaaacctgccacatcgagctggcctccagagttccagcct
ggtgtgccctggaagggaatccagagtagtggagacccagagtctgacccctacatgact
cccggtagtgttcttggttccccaggaccccaaacccttaacgactctgaccaccagtta
ctgcgagacaacatagggccaaacccctccctcaacacctcgctgccttcacctggtgcc
tggccctacagtgcctcagacagccccctcagcaatgcacacagcacaggaaagtactcg
gagtacaaacccagctggcccccagagcccatcggacaaaacaagttgtggaagaccaat
cgcaccagctcacagctgccacgcccccctcctggcttaaccaatcagaagcaggcatca
ccatccccatggggtagtggaggcccgcggttagcccggggctggggagggggtgggatt
aaccaagagtcaagatttgggccaggctcagcttggagcgacggtgtggcctccagaggc
agttgctggttgctgctgagcaacctgacccctcagatcgatggctccacactgaggact
atctgcatgcagcacggccccctgctgaccttccacctcggcctgacccagggcagcgct
ctgattcgctacagcagccggcaggaagcagccaaggcccagggtgcactgcacatgtgt
gtactgggcaacaccacaatcctggcggagtttgtgagtgaggaagaagttgctcgctat
tttgcacattcccaggccggaggggcagagggggccagctcaggaggggcagctgctggc
gggacacagggctcatctggaacaggcacagccgtggccagcagcggaggtagctccccg
ggaagtgagcgggcggcagcgggcacaacttcaggtggaaacggaaacggtggtggagga
ggggaaagcggaggcgcaggtttaggtagtgtaaggtcccccggctccggctggcagagt
ctcgatggtacaggcagttcttctgaaacgtcttcagcccaaggaccagggctggggata
ttttcccagtggagcactaacggggcaggggagggaggaggtgtcgggggagtagagtcc
gggaggtccggactgtgggggggcatgactgcgggatatcccagcagcagtctgtggggg
gcaccgcaaattgaggaaaggcaccaaatggacagccctgccgctttgttgcccggcgat
ctgctgggaggaggagctgattccatctga

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