Scomber scombrus (Atlantic mackerel): 133999391
Help
Entry
133999391 CDS
T10651
Name
(RefSeq) voltage-dependent T-type calcium channel subunit alpha-1I-like
KO
K04856
voltage-dependent calcium channel T type alpha-1I
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04010
MAPK signaling pathway
ssco04020
Calcium signaling pathway
Brite
Ion channels [BR:
ssco04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
133999391
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
133999391
NCBI-ProteinID:
XP_062294600
LinkDB
All DBs
Position
18:complement(16705030..16821920)
Genome browser
AA seq
2352 aa
AA seq
DB search
MTSEECPVPLGSISSAVPGQNEEYCLAQADDIIEEVGPGDDVSIGSDLSAIVVPFPELAP
VVFFCLKQTTCPRNWCIRMVSSPWFERISIMVILLNCVTLGMYQPCENIDCTSDRCQILQ
AFDAFIYIFFALEMVVKMVALGIFGRRCYLGDTWNRLDFFIVMAGMVEYSLDLQNINLSA
IRTVRVLRPLKAINRVPSMRILVNLLLDTLPMLGNVLLLCFFVFFIFGIIGVQLWAGLLR
NRCYLEENFTLSSGMALPAPYYQPEEDDERPFICSLPSDNGIMSCSDVPARREGGRTCCL
DKEDALHRQALGLSPEPMANGSGPGDAMGLCINWNQYYTRCHTGSSNPHKGAINFDNIVY
AWIVIFQVITLEGWVEIMYNVMDAHSFYNFIYFILLIIIGSFFMINLCLVVIATQFSETK
QREHQLMQEQRAQCLSSSTLASMAEPGDCYEEIFQLVCHVLRKAKRRSAALYYTLRGKPP
PPGGGRGNRRGGGNVNGERHHSKHPKLSHCPHQSKQDHESQPLANSISLAVPQNPEDCPV
CALSLKEGAKRDSANGEEDEEDAVNDTGKEENHLEERGDGERKKKRRTCFGYCRHIWNEM
RKKLWGIVESKYFSRGIMIAILINTISMGIEHHNQPDELTNVLEICNIVFTSMFTLEMIL
KLTAFGFFEYLRNPYNIFDGIIVIISVCEIIGQADGGLSVLRTFRLLRVIKLVRFMPALR
RQLVVLMKTMDNVATFCMLLMLFIFIFSILGMHIFGCKFSLKTEAGDTVPDRKNFDSLLW
AIVTVFQILTQEDWNMVLYNGMASTSPCAALYFVALMTFGNYVLFNLLVAILVEGFQAEG
DANRSYSDDDRSSYNFEENDKQKDTLHVSDPKICTLTPNGHLDLSPLPVGLFPGERLTFA
LGSRKNSVISLGRASLEQKAVYPGRSYNNWGRPLAPQPQALWARRSSWNSLVGCRPCSSS
SPSASPAFTPTSARPFYGYGLGSLGGVVGGSLRIRGPRASSPIPHEEESLLSPPAVAPNA
LHLPHPMLPGHFLPRRDRRALSLELPHMLQVPGAPHPPPPPHHLLPQRKKSFSGGMIITG
GGGGGLDSLGGLVGVHQDCNGKTPLSQLLQPPIRHPNEQAGGANNQGQLMAEVFPQVNTR
SKDQEDLDDDIEYSLCFRIQKMLEAYRPDWCESREDWSIFLFSPRNKFRQICQSIIAHKL
FDYVVLAFIFSNCITVALERPKILQGSLERVFLTISNYIFTAIFVSEMTLKVVSMGLYVG
EQAYLRSSWNILDGFLVFVSLIDIVVSMAGGAKILGVLRVLRLLRTLRPLRVISRAPGLK
LVVETLITSLKPIGNIVLICCAFFIIFGILGVQLFKGKFFYCFGPDVKNITNKSDCLQAN
YKWVHHKYNFDNLGQALMSLFVLASKDGWVNIMYHGLDAVAVDQQPVTNNNPWMLLYFIS
FLLIVSFFVLNMFVGVVVENFHKCRQHQEVEEAKRREEKRQRRMEKKRRKAQKLPYYSSY
GHVRLMIHTLCTNHYLDLIITFIICINVITMSLEHYNQPHSLDLALKYCNYFFTSTFVLE
SILKLIAFGFRRFFKERWNQLDLAIVLLSVMGITLEEIEISSALPINPTIIRIMRVLRIA
RVLKLLKMATGMRALLDTVVQALPQVGNLGLLFMLLFFIYAALGVELFGELVCNEDYPCE
GMSRHATFENFGMAFLTLFQVSTGDNWNGIMKDTLRECPPDNGIDVDYACNPSLQFISPM
YFVSFVLTAQFVLINVVVAVLMKHLDDSNKEAQEEAEMDAEIELELAQGTLCCMGAPGCG
GGGVEKGLVAAASGPGCTAGGKDRGGVRGERGDGVRKIRHAEASAHPGVYNSRDCSRTLY
SPAQESQWLDSVSLLIKDTLEGEMLMIDNLSGSVFHHYSSPPPVCKDCRGHPQEQIRMAE
IEQASLKSEQLSDKSSSPALPDDLSLDEHTAYQLLAREGKGRGSSDSRSSEETAGGGGHV
GVHQTQIVVQSQVQGLSKLCRALSNGVERETTLQEMEMQTHQPNMCSPRCSPGGVSSSSN
KEINTEGEEGASGISPLLHLPADFFHPAGAAIPAPPRSRSLRLSRGLRLTSPASWASLRS
PGAHSKMLCTQYPSHSDSSLATGSSEGSLQTTLEEGLSFSVSPPQNLELPTAPLPLVCPL
PLPEDSTTLSSPVQTLRPRQSSSSALTLQATRGHQRSQSSGRGSTSPGYTRDDSIDPSDE
DLGIVIGSSIGGCGSSQAGNSEHLSETLSSLSLTSLLSPSSLVYPGGAVKKCNSTGSLDQ
GGMLLSSRGREGRREILGLELMDPQGFLANPWTGVLPETRRGDGRRDIGDGEHGFKGKSS
SQTTVGPCRKNR
NT seq
7059 nt
NT seq
+upstream
nt +downstream
nt
atgacgagcgaggagtgtcctgtgccgctggggagcatttcctcagcagtgccagggcag
aatgaggaatattgcttggcgcaggctgatgacatcattgaggaagtgggtccaggtgac
gatgtcagtatcggcagtgacctaagcgctattgtggtgcctttcccagagctggcgcct
gtggtcttcttctgcctcaagcagaccacctgtcctcgcaactggtgcatccgtatggtt
tccagcccgtggttcgagaggattagcatcatggtgattcttctcaactgtgtgacactt
ggcatgtaccagccctgtgagaacatcgactgcacctcggaccgctgccagatactacag
gcttttgatgcattcatctacatcttctttgcacttgagatggtggtaaagatggtggcc
ctaggaatctttgggcgtcgatgttatctgggagacacctggaacaggctggatttcttc
atcgtcatggctgggatggtagagtactcactggacctgcagaacatcaacctatcggcc
ataaggacggtgcgggtccttcggcccctcaaagccatcaacagagtgccaagtatgcgt
atcctggtgaacctgctgctggacactctaccaatgctgggcaatgtgctactgctctgc
ttcttcgtcttcttcatcttcgggatcattggcgtgcagctgtgggcggggttactccgg
aaccgctgctaccttgaggagaacttcactctctcttcaggtatggccctgccagctccg
tactaccagccagaggaagatgatgaacgacccttcatttgctccctgccgtctgataac
ggcatcatgtcatgttctgatgtgccggcgaggcgtgaaggaggccgcacatgctgcctg
gacaaggaggacgcgctccacagacaggctctgggcctgagtcctgagcccatggcaaac
ggtagtggtcctggtgatgcaatgggtctgtgcatcaactggaaccagtattacacccgc
tgccacacagggagtagtaacccccacaaaggtgccatcaactttgacaacattgtctat
gcctggatagtaatttttcaggtgatcactctggagggctgggtagagatcatgtataat
gtaatggatgcccattccttctacaacttcatctacttcatcttactcatcattattggt
tcattcttcatgatcaacctgtgcctggtggttatcgccactcagttctcagagaccaaa
cagcgggaacaccagctgatgcaggagcaaagggctcagtgcctgtcttcctccaccctg
gccagcatggctgaaccgggagattgttacgaggagatcttccagctggtctgccatgtc
ctccgcaaggctaagaggagatcggcagctctctactacacgctgaggggcaagcccccc
cctcctggtggaggcaggggtaacaggcgaggtggagggaatgtgaatggagagcgccac
cattcaaagcacccaaaattatcccactgtccgcaccaaagcaaacaagaccatgaatct
caacctctagccaactccatcagtctggctgtgccccagaatccagaggactgccctgta
tgtgcattatcactaaaagagggtgcaaagagagactcggccaatggagaggaagatgag
gaggatgctgtgaatgacacgggcaaggaggagaaccacttagaggagaggggagatgga
gagaggaaaaagaaaaggaggacatgctttggatattgtaggcacatttggaatgaaatg
aggaagaaattgtggggcattgtggagagcaagtacttcagcaggggcatcatgatcgct
attctcatcaacaccatcagtatgggcatcgaacatcataaccagccggacgagttgaca
aatgtcctggaaatctgcaacattgtcttcaccagcatgttcaccttggagatgatctta
aagctgaccgcttttggcttctttgagtacctgaggaacccctataacatcttcgacggc
atcattgtcatcatcagtgtgtgtgagatcatcggccaggcagacggcggtctgtcagtg
ctgaggaccttcaggctgctcagggtcatcaagctggtgaggttcatgcctgctctgagg
cggcagctggtggtactgatgaagacgatggacaacgtagccactttctgtatgctgctc
atgcttttcatcttcatattcagtatcctggggatgcatattttcggttgtaagttcagt
ctgaagacagaagctggagacacagtgcctgacaggaagaactttgactccctgctctgg
gctatcgtcactgtctttcagattctgacccaggaggactggaacatggtgttgtacaat
ggcatggcgtccacctcgccttgtgctgccctctactttgtagctcttatgacttttgga
aactacgtgctcttcaatttactggttgccatcttggtagagggtttccaagctgaggga
gatgcaaaccgctcttactcggatgatgacaggtcttcctacaattttgaggagaatgat
aagcagaaagacactctgcatgtatcagacccaaagatctgtacactgacccctaatggg
cacctagacttgtccccactgcccgtcggtctgtttccaggagagaggctgacctttgct
ctcggatccaggaagaacagtgttatttctcttggcagggccagcctggaacagaaggct
gtgtatccaggtcggagttacaacaactggggccgcccactggctccccagcctcaggcc
ttgtgggcccgtcgttccagttggaacagcctggtaggatgccgtccctgctcctcctca
tctccctctgctagtccagccttcacacccacctctgcaaggcctttctatggctacggc
ctaggcagtctgggaggggtggttggaggaagccttcgtatccggggccctcgtgcgtct
tcgccgatcccgcacgaggaggaatctcttctctctcctcctgctgttgctcccaatgct
cttcaccttccccatcctatgctcccgggccattttctacccaggagggatcgcagagct
ctatcgctagagctgccccacatgctacaggtcccaggagccccacaccctccaccacca
ccacaccacctgctgccccaaaggaagaagagcttctctggggggatgataatcactgga
ggtggtggtggtgggcttgatagcctgggtggcttagtaggggttcaccaagactgtaat
gggaagactccactgtcgcagcttctccagccccctattagacacccgaatgagcaggct
ggaggggcaaacaatcagggccagttgatggctgaagtcttcccccaggttaacacacgc
agcaaggaccaggaggacctggatgatgatattgaatatagcttgtgcttccgcatccag
aagatgttagaagcgtacaggccagactggtgtgagagcagagaggactggtctatcttc
ctattctccccacggaacaagttcagacagatatgccagtccatcatagcccacaagctg
tttgactatgtggtgttggcattcatcttctccaactgcatcacagtggctctggagagg
cccaagatactacagggcagcttggaaagagtctttctcaccatctccaactacatcttt
actgccatctttgtgagcgagatgacactcaaggtggtttccatgggtctgtatgtgggt
gaacaggcttatttgcgtagcagctggaatattctggatggattcctggtctttgtgtct
ttgattgacattgttgtgtccatggcgggtggggctaagatcctgggtgtacttagagta
ctcaggctgctcagaacattgcgtcccctcagagtgattagcagagctccaggtctgaag
ctggtggtggagaccctcatcacttcgctcaaacccattggcaacatcgtcctcatctgc
tgtgctttcttcatcatctttggcattcttggtgttcagctgtttaaaggcaaattcttc
tactgctttggccctgatgtcaaaaacatcaccaataagtctgactgtctgcaagccaac
tacaagtgggtccaccataagtacaactttgacaatctgggacaggctctgatgtccctg
tttgtactcgcctcaaaggatggctgggtgaacatcatgtatcatggtctggatgctgtg
gctgtggaccaacagccggtgaccaacaacaacccatggatgctgctgtatttcatctcc
ttcctcctcatcgtcagcttctttgtcctcaacatgtttgttggcgtggtggtggagaac
tttcacaagtgccgccaacaccaagaggtggaggaggccaagaggcgtgaggagaagcgt
cagcggcgcatggaaaagaagaggagaaaggctcagaagctgccctactattccagctat
ggccacgtgcgcctgatgatccacacactgtgcacaaaccactacctggacctcatcatc
acctttatcatctgcatcaacgtcatcaccatgtccctcgagcactacaatcagcctcat
tcactggatctcgccctgaagtactgcaactatttcttcacctccacttttgtgctggaa
tcaatactcaaactcatcgcctttggcttccgccgcttcttcaaagagaggtggaaccag
ttggatctggccattgtgcttctgtcagtgatgggtatcactctggaggagattgagatt
agttccgccctgcccatcaaccccacaatcatcaggatcatgagagtactacggatagca
cgagttttgaagctgctgaagatggcgacaggaatgagagccctgttggatacagtggtc
caagccctgcctcaggtgggtaacctgggcctgctctttatgctactgtttttcatctac
gccgccttaggagtagagcttttcggagaacttgtttgcaatgaagactacccatgtgag
ggtatgagtcgtcacgctacttttgagaactttggcatggccttccttaccttgtttcaa
gtctccacgggcgacaactggaatggcattatgaaggatacattgcgggagtgtccacca
gacaatggcatagatgtggactacgcctgcaatccaagccttcagtttatctcgcccatg
tactttgtctccttcgtgctcaccgcccagttcgtgctcatcaatgtggtggtggccgtg
ctgatgaagcacctggacgactccaacaaggaggcccaagaggaggcggagatggatgca
gaaattgagctggagctagcccagggcaccctctgttgcatgggcgcccccggctgcggg
ggtgggggggttgagaaaggactggtcgcagctgcatcggggcctggatgcacagcgggg
ggaaaggacagaggaggtgtaagaggagagaggggagatggagttaggaagatccgacac
gcagaagccagcgctcacccaggagtgtacaattcccgcgactgcagccggaccctgtac
tcaccagcacaagagagccagtggttggacagcgtctctctgctgatcaaggatacgtta
gagggggagatgctgatgatcgacaacctctccggttctgtcttccaccactactcctct
cctccacctgtctgcaaagactgcaggggccacccacaagagcagatcaggatggcagag
attgagcaagcatcactgaagtcagagcaactctcagacaagtcatcatcccctgccctg
ccagatgacctcagcctggatgaacatacagcctaccagctgctggcacgagagggcaag
ggaaggggcagcagcgactcccgcagctctgaggagaccgcgggtggaggaggtcatgta
ggagttcaccagactcagatcgtagtgcagagccaggtgcaggggctcagcaagctgtgc
agggccctcagcaatggtgttgagagggaaacgacactacaggagatggagatgcaaaca
catcaaccaaatatgtgctcacctcggtgcagccctggtggcgtttccagcagcagcaac
aaggagataaacacagaaggagaagaaggagccagtggtatctctcctctcttacatctg
cctgcagacttcttccaccctgcaggagcagccatcccagcacctccccgcagtaggagc
ctgagattgtccaggggcctcaggctgacctcccccgcctcctgggcctcactacgctca
ccaggagcccatagcaagatgctctgtacacagtacccatctcacagtgactcatccctt
gcaacgggcagctctgaaggcagcctccagaccaccctggaagaaggactgagcttcagc
gtttctccaccacagaatttggagttgcccacagctcccttgccacttgtgtgcccactt
ccgctgcccgaagacagcaccacactctcttccccagtccagaccctgagaccgagacag
agctcctcatcagctttaactctccaggccactaggggccaccaacggagccagagcagt
gggcgaggtagcaccagccctggctacacccgtgatgactcaattgacccttcagatgag
gatctgggcattgtcattggatcatcaattggtggttgtggctccagccaagcaggcaac
agtgaacacttgtcagagacactgagcagcttgtcgctgacatcactgctgtcgcccagc
tctctggtataccccggaggagcagtgaagaagtgcaatagcacaggtagcctggaccaa
gggggaatgctgctgtcatcccggggaagggaaggccgcagagagattctgggcctggag
cttatggaccctcaaggcttcttggccaacccctggacaggggtattacctgagacaaga
agaggagatggaagaagggacataggagatggagagcatgggttcaaagggaagagctca
agccaaacaacagtggggccttgtcgtaaaaacagatga
DBGET
integrated database retrieval system
