Scomber scombrus (Atlantic mackerel): 133999445
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Entry
133999445 CDS
T10651
Symbol
grin2ca
Name
(RefSeq) glutamate receptor, ionotropic, N-methyl D-aspartate 2Ca
KO
K05211
glutamate receptor ionotropic, NMDA 2C
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04020
Calcium signaling pathway
ssco04080
Neuroactive ligand-receptor interaction
ssco04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
133999445 (grin2ca)
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
133999445 (grin2ca)
04082 Neuroactive ligand signaling
133999445 (grin2ca)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ssco04040
]
133999445 (grin2ca)
Ion channels [BR:
ssco04040
]
Ligand-gated channels
Glutamate (ionotropic)
133999445 (grin2ca)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Lig_chan
Lig_chan-Glu_bd
NMDAR2_C
ANF_receptor
SBP_bac_3
Motif
Other DBs
NCBI-GeneID:
133999445
NCBI-ProteinID:
XP_062294615
LinkDB
All DBs
Position
18:complement(3449452..3504257)
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AA seq
1413 aa
AA seq
DB search
MGVRLGCLSDSPWWPPLPLLLLLFCTVPRCSGRPFGIPTPSVNVAVVFSGSAYQSEIKGR
LSRENFMDLPLEVNPITVLVNNTNPRALLTRICDTLSTNRVHGVVFEDNVGSEAVAQILD
FISTQTSVPIVGISGGSAVVLPYKGEGSNFLQLGSSIEQQINGMFKVMEEYNWDSFVVIT
SLYPGYETYVDYIKSFTDTSYFMWELQDVLTFDMSADGMNDIRARRLLQQIDAQVLLVYC
SHEEAQYLFTMASESGLVGPGYIWIIPSLAVGNPDIPPPDSFPVGLISIITDRWRMSLRK
RVRDGVAIVVKGVQSFRKQRGFVPEGHSDCHNPLKPPSTNDTLFRHMLNVTWEHNDFSFN
SNGYLVNPAMIIITLDRERLWDKVGNYETGILQMRYPVWPRYGSYLEPVSDYRHLTVATL
EERPFVIVESVDPVTGTCVSNTVPCRRQSNKTEAIVGHTEPYTKLCCKGFCIDILKKLSR
TIKFSYDLYLVTNGKHGKLVRGIWNGMIGEVFYKRADMAIGSLTINEERSEIIDFSVPFV
ETGISVMVARSNGTVSPSAFLEPYSPAVWVMMFVMCLTVVAITVFVFEYCSPVGYNRSLV
TAKDPGGPTFTIGKSVWLLWGIVFNNSVPIENPKGTTSKIMVLVWAFFAVIFLASYTANL
AAFMIQEQYIDTVSGLSDKKFQKPQEQYPPFRFGTVPNGSTERNIRSNYPEMHSHMVKYN
QKGVEDALNSLKTGKLDAFIYDAAVLNYMAGKDEGCKLVTIGSGKVFATTGYGIALQKDS
RWKRHIDLALLQFLADGDTQKLQTVWLTGICRNEKKEVMSSKLDIDNMAGVFYMLLVAMG
LSLLVFAWEHLLYWKLRHSVRKSERLDFLLAISRGIYSCFNGVEHTDHNGSMPSPDVTTN
YSQANMLKMLQTAKNMVSSARVENSLDNATKTIENWSRRGGDNVRVGLPPRVMTTDMTHG
RLPYISSITDNHLPYAQRAITPTFPIHYGDPTTQPLLDKPRVVTRPTPLRYTLPSRNSQH
VLERTLPISSLSSPHIAIRDPAPSGPPNPHHSSRLYVENQPRHPTSSFVPYREFQVPDIY
LEHKGPLRRKFSYPPDCVSRRRRSHSYVFDAADPRVRAEYNEPRSCLAELRANHLLNNHG
ADASAMACTGHYPGGSTSCNSCMKSYLEPEMDDVPLLGKDKLNRRASFLKATWGNDRVHQ
VDETKPSTSTSPSNRTDMPDLFPRVVVANPKPHKLYGSLGHNLSCYPLAAEPAYLDPAHM
RSYPYKQKLRYSESTRLPSYREAILQNAAALRRSSSTVVHRHYSTYLNSYTDLPVYVGPL
AQGPPQFYDSSKDMCHLFPCTSHCPDNAAMLPRMSDRQMVYQNNMFGGYDGTGKREDPGS
GSRERRQVLVARRVNSPYVPKPWGRVSSLESEV
NT seq
4242 nt
NT seq
+upstream
nt +downstream
nt
atgggcgttcgtctaggctgcttgagcgactccccgtggtggccgccgctgccgctgctg
ctgctgctgttttgcactgtcccccgctgttcgggccggcctttcgggatccccacaccc
tcggtgaacgtggcggtggtgttcagcggctcggcctaccagtcggagattaaagggcgg
ttgagccgagaaaacttcatggacctgcctctggaggtgaaccccatcactgtgctggtc
aacaacaccaacccacgggcgctgctcacccgcatctgtgacaccctgtccaccaaccgc
gtgcatggcgtggtgtttgaggacaacgttggctcggaggccgtggcacagatcttggac
ttcatttccactcaaacatcggtgcccatcgtgggtatcagtggaggctctgctgttgtg
ctgccctacaagggtgaaggctctaacttcctccagctgggctcctccatcgagcagcag
atcaacggcatgttcaaggtgatggaggagtacaactgggacagcttcgtcgtcatcacc
agcctctacccgggctacgaaacctacgtggattacatcaagtccttcacagacaccagc
tacttcatgtgggagcttcaggacgtgctgacattcgacatgtccgccgacggcatgaac
gacatccgagctcggaggcttctgcagcagatagacgcccaggtgctgctggtctactgc
tctcacgaagaagcccagtacttgttcaccatggcgagcgagtctggactggtggggccg
ggctacatctggattatccccagcctggctgtggggaacccggatatccctccgcccgac
agcttccccgtggggctcatcagcatcatcacagaccggtggaggatgagcttgaggaaa
agggttcgggacggcgtagccatcgtggtgaaaggcgtgcaaagctttcggaaacagaga
ggcttcgttccggagggccacagcgactgtcacaacccgctcaaaccaccttctactaat
gacacgctgttcaggcacatgttgaatgtcacctgggaacacaacgacttctccttcaac
agtaacggttacctggtgaatcccgccatgatcatcatcacgctggacagagagagacta
tgggacaaggtggggaactacgagacagggatcctgcagatgcgataccccgtgtggccg
cgatacggttcctacctggagccggtgtcggattacaggcacctgacagtggcgaccctg
gaggagcggcccttcgtcatcgtggagtcggtggatccagtgactggtacatgtgtcagc
aacactgtaccatgccgacgacagtccaacaagacggaggctattgtcggtcacactgag
ccttacaccaaactgtgctgtaagggcttctgcatagacatcttgaagaagttgtcccgc
accataaagttctcctacgatctctacctggtgaccaacggcaagcacggcaagctggtc
cgcggcatttggaacgggatgatcggagaggtgttctacaagcgggcggacatggccatc
ggctcgctgaccataaacgaagagcgctcggagattattgacttctccgtgccgttcgtg
gagacggggattagtgtgatggtggccagaagtaacgggacggtctcaccatctgccttt
ttagaaccgtacagcccggcggtctgggtgatgatgtttgtcatgtgtctgactgtggtg
gccatcacagtcttcgtctttgagtactgcagtccggtcgggtacaatcgcagcctggtc
actgccaaagatcccggcggtcccaccttcaccatcgggaagtcagtgtggctgttgtgg
ggaatcgtcttcaacaactccgtccccatcgagaatcccaaaggcaccaccagtaagatc
atggtcctggtctgggctttcttcgctgtcatcttcctggcttcgtacacagccaacctg
gcagccttcatgatccaggagcaatacattgacactgtctctggactgagtgacaaaaag
tttcaaaagccgcaggagcagtaccctccgttccgctttggtacagtcccaaatggcagc
acagagcgcaacataaggagtaactaccctgagatgcactcccacatggtcaaatacaac
cagaagggagtagaggatgcccttaacagcctcaaaacagggaaactggatgcctttatc
tatgatgctgctgtgctgaattacatggctggcaaagacgagggctgcaagctggtgacc
attggcagtgggaaagtgtttgctaccactggttatggcatcgcactgcagaaggattca
cgttggaagcgacacatcgacctggctctgctccagttcctggctgatggtgacacacag
aagctgcagaccgtctggctcacgggcatctgccgaaatgagaagaaagaggtgatgagc
agtaagctggacatcgacaacatggcgggagtcttctacatgctgcttgtggccatgggt
ctgagtctgctggtttttgcctgggaacatctgctctactggaaactgagacattcagta
cgcaaatcagagcgcctggacttccttcttgctatcagtcgaggcatctacagctgcttc
aatggagtagagcacactgatcacaatggaagcatgccgagtccggacgttactaccaac
tattcacaagccaacatgctaaagatgctgcaaacagcaaagaacatggtgtcgtctgcc
agagtggagaactctctggacaatgcaaccaagacaatagagaactggagcaggcgaggg
ggcgacaatgtgcgggtcggcctgccacccagagtgatgaccacagacatgacccacggc
cgcttgccctacatctccagcatcacagacaaccatttaccgtacgctcagagggccatc
acacccaccttcccaattcattacggggaccccaccacccagcccctgttggataaaccc
cgggtggtgacccggccgactccgctccgctacacgttgccctcccgcaacagtcaacat
gtattagagaggactctgcccatctccagcctcagcagccctcacatcgccattagggac
cctgctccctccggtccacctaacccccaccacagcagcaggctgtatgtggagaaccag
ccccggcaccctacgtcctcttttgtcccttacagggaattccaggtgcccgatatctac
ctggagcacaaaggaccactgaggaggaagtttagctacccccctgactgtgtgagtcgg
aggaggaggtcccatagctacgtgttcgatgctgcagaccccagagtgagagctgaatat
aatgaacctcgatcctgccttgctgagctgagggccaatcacctgctgaacaaccatggc
gcagatgcttctgccatggcctgtacaggacactatccaggcggcagcaccagctgcaac
tcctgtatgaagtcctacctggagcctgaaatggatgacgtaccacttctggggaaggac
aaactcaaccgccgcgcctcattcctcaaagccacatggggcaacgatagggtccatcag
gtagatgaaacaaagccctccacatccacatctccatcgaaccgcacagacatgcctgac
ctgtttccgcgggtggtagtagccaacccaaagccccataagctttacggcagcttgggg
cataacctgtcctgctaccccctggctgctgagcctgcctacttggacccggcccacatg
cgctcctacccttacaagcaaaagctcaggtactctgagtccacccggctgccctcgtac
agggaggccatcctgcagaatgccgctgccctgcgccgctcctcctccacagtggtgcac
agacactactccacctacctgaactcatacacagacctaccagtgtatgtggggccgctg
gcccaggggccgccacagttctacgacagttccaaggacatgtgccacttgtttccctgt
acaagccactgcccagataatgcagcaatgttgcctcgtatgagtgacaggcagatggtc
taccagaacaatatgtttgggggctacgatggcacaggaaagagggaagacccaggctct
gggagcagagagcggaggcaagttttggtggcgcgcagagtcaacagtccctatgtgcca
aagccctggggcagggtatctagcctggagtctgaggtctga
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